Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00944

Experiment: PYE with Gentamicin 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Gentamicin 0.0005 mg/ml
1,020,867	+		CCNA_00943	0.72	+1.5
1,020,867	+		CCNA_00943	0.72	+1.2
1,020,867	+		CCNA_00943	0.72	-1.3
1,020,867	+		CCNA_00943	0.72	-0.7
1,020,867	+		CCNA_00943	0.72	-0.5
1,020,875	-		CCNA_00943	0.72	-0.7
1,020,875	-		CCNA_00943	0.72	+0.4
1,020,875	-		CCNA_00943	0.72	+0.4
1,020,875	-		CCNA_00943	0.72	+0.8
1,020,875	-		CCNA_00943	0.72	+1.3
1,020,875	-		CCNA_00943	0.72	+0.3
1,020,875	-		CCNA_00943	0.72	+1.7
1,020,875	-		CCNA_00943	0.72	+0.6
1,020,907	+		CCNA_00943	0.73	-0.5
1,020,915	-		CCNA_00943	0.74	+1.7
1,020,915	-		CCNA_00943	0.74	+1.3
1,020,956	+		CCNA_00943	0.76	-1.7
1,020,958	+		CCNA_00943	0.76	+1.5
1,020,958	+		CCNA_00943	0.76	+0.6
1,020,966	-		CCNA_00943	0.76	+0.8
1,021,008	-		CCNA_00943	0.78	+0.7
1,021,010	+		CCNA_00943	0.78	+0.1
1,021,065	+		CCNA_00943	0.81	+1.0
1,021,070	+		CCNA_00943	0.81	+0.8
1,021,070	+		CCNA_00943	0.81	-0.0
1,021,073	-		CCNA_00943	0.81	-0.5
1,021,078	-		CCNA_00943	0.82	+0.7
1,021,086	-		CCNA_00943	0.82	-1.3
1,021,126	+		CCNA_00943	0.84	-1.3
1,021,134	-		CCNA_00943	0.84	+0.6
1,021,134	-		CCNA_00943	0.84	+0.7
1,021,145	-		CCNA_00943	0.85	+0.2
1,021,165	+		CCNA_00943	0.86	+0.6
1,021,187	+		CCNA_00943	0.87	-0.5
1,021,279	-				+1.9
1,021,279	-				-0.1
1,021,283	+				-0.2
1,021,323	+				-0.3
1,021,326	-				-0.2
1,021,374	+				+0.6
1,021,377	-				-0.5
1,021,394	-				+0.1
1,021,401	+				-0.2
1,021,409	-				-1.1
1,021,409	-				-0.9
1,021,463	+				-1.8
1,021,468	+				+0.3
1,021,471	-				+0.2
1,021,476	-				-1.2
1,021,486	-		CCNA_03944	0.14	-0.6
1,021,565	+		CCNA_03944	0.81	+0.6
1,021,803	+				+1.6
1,021,870	+				+1.6
1,021,962	+				+2.1
1,021,965	-				-0.0
1,021,982	+				+1.3
1,022,016	-		CCNA_00944	0.12	-0.5
1,022,095	-		CCNA_00944	0.19	-0.9
1,022,110	+		CCNA_00944	0.20	+2.0
1,022,110	+		CCNA_00944	0.20	+2.5
1,022,115	+		CCNA_00944	0.21	+1.6
1,022,261	-		CCNA_00944	0.33	-0.7
1,022,321	+		CCNA_00944	0.38	+2.3
1,022,389	+		CCNA_00944	0.43	+1.9
1,022,409	+		CCNA_00944	0.45	+1.7
1,022,426	-		CCNA_00944	0.46	-0.7
1,022,443	+		CCNA_00944	0.48	+2.1
1,022,446	-		CCNA_00944	0.48	-1.3
1,022,446	-		CCNA_00944	0.48	-2.2
1,022,479	+		CCNA_00944	0.51	+1.9
1,022,489	+		CCNA_00944	0.52	+1.8
1,022,504	+		CCNA_00944	0.53	+1.7
1,022,510	-				+0.6
1,022,516	-		CCNA_00944	0.54	-1.4
1,022,525	+		CCNA_00944	0.55	+2.0
1,022,536	+		CCNA_00944	0.56	+1.8
1,022,546	+		CCNA_00944	0.56	+1.8
1,022,553	+		CCNA_00944	0.57	+2.0
1,022,595	+		CCNA_00944	0.61	+2.2
1,022,634	+		CCNA_00944	0.64	+2.1
1,022,701	+		CCNA_00944	0.69	+1.7
1,022,712	+		CCNA_00944	0.70	+2.2
1,022,712	+		CCNA_00944	0.70	+1.8
1,022,829	-		CCNA_00944	0.80	-1.6
1,022,882	+		CCNA_00944	0.84	+1.4
1,022,891	-		CCNA_00944	0.85	-0.3
1,022,896	-		CCNA_00944	0.86	-1.6
1,022,897	-		CCNA_00944	0.86	+1.8
1,023,004	-				+0.5
1,023,047	-				-0.2
1,023,116	-		CCNA_00945	0.27	-1.2
1,023,137	+		CCNA_00945	0.29	+0.9
1,023,147	+		CCNA_00945	0.31	+1.8
1,023,188	+		CCNA_00945	0.36	+2.4
1,023,209	-				+1.8
1,023,213	-		CCNA_00945	0.40	-0.4
1,023,233	-		CCNA_00945	0.42	-0.3
1,023,248	+		CCNA_00945	0.45	+1.9
1,023,248	+		CCNA_00945	0.45	+2.0
1,023,249	+		CCNA_00945	0.45	+2.0
1,023,256	-		CCNA_00945	0.46	+0.4
1,023,256	-		CCNA_00945	0.46	-0.9
1,023,268	+		CCNA_00945	0.47	+1.7
1,023,301	-		CCNA_00945	0.52	+0.5
1,023,301	-		CCNA_00945	0.52	-1.0
1,023,301	-		CCNA_00945	0.52	-0.7
1,023,353	+				+2.8
1,023,392	+		CCNA_00945	0.64	+2.0
1,023,392	+		CCNA_00945	0.64	+1.9
1,023,404	+		CCNA_00945	0.66	+2.2
1,023,411	+		CCNA_00945	0.67	+2.0
1,023,413	-		CCNA_00945	0.67	+0.6
1,023,416	+		CCNA_00945	0.67	+1.9
1,023,426	+		CCNA_00945	0.69	+2.1
1,023,454	+		CCNA_00945	0.73	+2.2
1,023,471	-		CCNA_00945	0.75	-0.1
1,023,484	+		CCNA_00945	0.77	+1.8
1,023,517	-		CCNA_00945	0.81	-0.5
1,023,517	-		CCNA_00945	0.81	-0.4
1,023,520	+		CCNA_00945	0.82	+1.5
1,023,528	-		CCNA_00945	0.83	+0.5
1,023,528	-		CCNA_00945	0.83	-1.2
1,023,552	+		CCNA_00945	0.86	+1.9
1,023,561	+		CCNA_00945	0.87	+2.6
1,023,561	+		CCNA_00945	0.87	+1.8
1,023,561	+		CCNA_00945	0.87	+1.9
1,023,571	+		CCNA_00945	0.89	+1.8
1,023,592	+				+1.6
1,023,592	+				+1.9
1,023,600	-				-0.3
1,023,610	+				+1.5
1,023,629	-				-1.1
1,023,656	-				+1.0
1,023,672	+				+1.3
1,023,675	-				+2.4
1,023,688	+				+2.1
1,023,704	-				-0.3
1,023,707	+				+1.2
1,023,729	-				+0.6
1,023,746	+		CCNA_00946	0.12	+1.5
1,023,761	-		CCNA_00946	0.14	-0.2
1,023,841	+		CCNA_00946	0.26	+2.2
1,023,849	+		CCNA_00946	0.27	+2.0
1,023,849	+		CCNA_00946	0.27	+1.8
1,023,849	+		CCNA_00946	0.27	+1.7
1,023,849	-		CCNA_00946	0.27	-1.5
1,023,870	+		CCNA_00946	0.30	+2.0
1,023,900	-		CCNA_00946	0.34	-0.6
1,023,914	+		CCNA_00946	0.36	+1.8
1,023,917	-		CCNA_00946	0.37	-1.0
1,023,917	-		CCNA_00946	0.37	+1.2
1,023,917	-		CCNA_00946	0.37	-0.7
1,023,919	+		CCNA_00946	0.37	+2.0
1,023,919	+		CCNA_00946	0.37	+0.7
1,023,919	+		CCNA_00946	0.37	+1.1
1,023,922	-		CCNA_00946	0.38	+0.9
1,023,927	-		CCNA_00946	0.38	-1.0
1,023,927	-		CCNA_00946	0.38	-0.2
1,023,982	-		CCNA_00946	0.46	-0.7
1,023,985	-		CCNA_00946	0.47	+0.2
1,024,020	-		CCNA_00946	0.52	-1.7