Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00862

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00860 and CCNA_00861 are separated by 123 nucleotidesCCNA_00861 and CCNA_00862 are separated by 138 nucleotidesCCNA_00862 and CCNA_00863 overlap by 8 nucleotidesCCNA_00863 and CCNA_00864 are separated by 124 nucleotides CCNA_00860: CCNA_00860 - holdfast inhibitor protein HfiA, at 938,619 to 938,855 _00860 CCNA_00861: CCNA_00861 - hypothetical protein, at 938,979 to 939,557 _00861 CCNA_00862: CCNA_00862 - Xylonate dehydratase (EC 4.2.1.82) (from data), at 939,696 to 941,471 _00862 CCNA_00863: CCNA_00863 - xylonolactonase xylC, at 941,464 to 942,333 _00863 CCNA_00864: CCNA_00864 - D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data), at 942,458 to 943,204 _00864 Position (kb) 939 940 941 942Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 938.696 kb on - strand, within CCNA_00860at 938.712 kb on + strand, within CCNA_00860at 938.738 kb on + strand, within CCNA_00860at 938.752 kb on - strand, within CCNA_00860at 938.757 kb on - strand, within CCNA_00860at 938.848 kb on + strandat 938.928 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.956 kb on - strandat 938.958 kb on + strandat 938.984 kb on - strandat 938.984 kb on - strandat 938.993 kb on - strandat 938.996 kb on + strandat 939.006 kb on + strandat 939.006 kb on + strandat 939.032 kb on - strandat 939.075 kb on + strand, within CCNA_00861at 939.083 kb on - strand, within CCNA_00861at 939.110 kb on + strand, within CCNA_00861at 939.118 kb on - strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.171 kb on + strand, within CCNA_00861at 939.171 kb on + strandat 939.204 kb on + strand, within CCNA_00861at 939.212 kb on - strand, within CCNA_00861at 939.240 kb on + strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.282 kb on + strand, within CCNA_00861at 939.309 kb on - strand, within CCNA_00861at 939.323 kb on - strand, within CCNA_00861at 939.374 kb on + strand, within CCNA_00861at 939.396 kb on + strand, within CCNA_00861at 939.463 kb on + strand, within CCNA_00861at 939.465 kb on + strand, within CCNA_00861at 939.496 kb on - strand, within CCNA_00861at 939.509 kb on + strandat 939.509 kb on + strandat 939.517 kb on - strandat 939.573 kb on - strandat 939.685 kb on - strandat 939.758 kb on - strandat 939.766 kb on + strandat 939.774 kb on - strandat 939.779 kb on - strandat 939.876 kb on - strand, within CCNA_00862at 939.903 kb on - strand, within CCNA_00862at 939.903 kb on - strand, within CCNA_00862at 939.903 kb on - strand, within CCNA_00862at 939.904 kb on - strand, within CCNA_00862at 939.980 kb on - strand, within CCNA_00862at 939.985 kb on - strand, within CCNA_00862at 940.030 kb on - strand, within CCNA_00862at 940.031 kb on + strand, within CCNA_00862at 940.081 kb on + strand, within CCNA_00862at 940.099 kb on - strand, within CCNA_00862at 940.104 kb on + strand, within CCNA_00862at 940.112 kb on - strand, within CCNA_00862at 940.135 kb on - strand, within CCNA_00862at 940.281 kb on + strand, within CCNA_00862at 940.307 kb on - strand, within CCNA_00862at 940.307 kb on - strand, within CCNA_00862at 940.344 kb on - strand, within CCNA_00862at 940.441 kb on - strand, within CCNA_00862at 940.441 kb on - strand, within CCNA_00862at 940.521 kb on - strand, within CCNA_00862at 940.521 kb on - strand, within CCNA_00862at 940.557 kb on + strand, within CCNA_00862at 940.557 kb on + strand, within CCNA_00862at 940.565 kb on - strand, within CCNA_00862at 940.565 kb on - strand, within CCNA_00862at 940.565 kb on - strand, within CCNA_00862at 940.638 kb on + strand, within CCNA_00862at 940.673 kb on - strand, within CCNA_00862at 940.685 kb on - strand, within CCNA_00862at 940.720 kb on + strand, within CCNA_00862at 940.725 kb on + strand, within CCNA_00862at 940.758 kb on - strand, within CCNA_00862at 940.783 kb on - strand, within CCNA_00862at 940.796 kb on - strand, within CCNA_00862at 940.815 kb on - strand, within CCNA_00862at 940.825 kb on - strand, within CCNA_00862at 940.839 kb on - strand, within CCNA_00862at 940.847 kb on - strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.894 kb on - strand, within CCNA_00862at 940.979 kb on - strand, within CCNA_00862at 940.979 kb on - strand, within CCNA_00862at 941.001 kb on + strand, within CCNA_00862at 941.012 kb on - strand, within CCNA_00862at 941.017 kb on - strand, within CCNA_00862at 941.072 kb on - strand, within CCNA_00862at 941.097 kb on + strand, within CCNA_00862at 941.102 kb on + strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.113 kb on - strand, within CCNA_00862at 941.124 kb on + strand, within CCNA_00862at 941.142 kb on - strand, within CCNA_00862at 941.220 kb on + strand, within CCNA_00862at 941.222 kb on + strand, within CCNA_00862at 941.228 kb on - strand, within CCNA_00862at 941.228 kb on - strand, within CCNA_00862at 941.230 kb on - strand, within CCNA_00862at 941.230 kb on - strand, within CCNA_00862at 941.263 kb on + strand, within CCNA_00862at 941.270 kb on - strand, within CCNA_00862at 941.273 kb on + strand, within CCNA_00862at 941.281 kb on - strand, within CCNA_00862at 941.281 kb on - strand, within CCNA_00862at 941.313 kb on + strandat 941.321 kb on - strandat 941.321 kb on - strandat 941.373 kb on + strandat 941.373 kb on - strandat 941.427 kb on - strandat 941.515 kb on + strandat 941.525 kb on + strandat 941.539 kb on + strandat 941.560 kb on + strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.569 kb on - strand, within CCNA_00863at 941.582 kb on + strand, within CCNA_00863at 941.596 kb on + strand, within CCNA_00863at 941.601 kb on + strand, within CCNA_00863at 941.615 kb on + strand, within CCNA_00863at 941.631 kb on + strand, within CCNA_00863at 941.639 kb on - strand, within CCNA_00863at 941.639 kb on - strand, within CCNA_00863at 941.654 kb on - strand, within CCNA_00863at 941.680 kb on + strand, within CCNA_00863at 941.704 kb on + strand, within CCNA_00863at 941.762 kb on + strand, within CCNA_00863at 941.770 kb on - strand, within CCNA_00863at 941.789 kb on - strand, within CCNA_00863at 941.815 kb on - strand, within CCNA_00863at 941.823 kb on + strand, within CCNA_00863at 941.823 kb on + strand, within CCNA_00863at 941.830 kb on + strand, within CCNA_00863at 941.831 kb on - strandat 941.838 kb on - strand, within CCNA_00863at 941.862 kb on + strand, within CCNA_00863at 941.863 kb on + strand, within CCNA_00863at 941.871 kb on - strand, within CCNA_00863at 941.903 kb on - strand, within CCNA_00863at 941.938 kb on + strand, within CCNA_00863at 941.951 kb on - strand, within CCNA_00863at 941.974 kb on - strand, within CCNA_00863at 941.976 kb on - strand, within CCNA_00863at 941.976 kb on - strand, within CCNA_00863at 941.983 kb on + strand, within CCNA_00863at 942.001 kb on - strand, within CCNA_00863at 942.018 kb on - strand, within CCNA_00863at 942.046 kb on + strand, within CCNA_00863at 942.073 kb on - strand, within CCNA_00863at 942.087 kb on - strand, within CCNA_00863at 942.166 kb on + strand, within CCNA_00863at 942.237 kb on + strand, within CCNA_00863at 942.252 kb on + strandat 942.253 kb on + strandat 942.261 kb on - strandat 942.272 kb on - strandat 942.274 kb on + strandat 942.327 kb on - strandat 942.358 kb on + strandat 942.366 kb on - strandat 942.368 kb on + strandat 942.375 kb on + strandat 942.415 kb on - strandat 942.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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938,696 - CCNA_00860 0.32 +0.9
938,712 + CCNA_00860 0.39 -0.6
938,738 + CCNA_00860 0.50 +2.4
938,752 - CCNA_00860 0.56 +0.9
938,757 - CCNA_00860 0.58 +0.2
938,848 + -0.4
938,928 + +1.2
938,948 + -1.3
938,948 + +0.2
938,956 - +0.3
938,958 + +2.9
938,984 - +1.6
938,984 - -1.2
938,993 - -0.8
938,996 + +1.6
939,006 + -2.4
939,006 + -0.4
939,032 - -1.9
939,075 + CCNA_00861 0.17 -0.6
939,083 - CCNA_00861 0.18 -2.1
939,110 + CCNA_00861 0.23 -0.0
939,118 - CCNA_00861 0.24 +2.5
939,124 + CCNA_00861 0.25 -0.8
939,124 + CCNA_00861 0.25 +0.6
939,124 + CCNA_00861 0.25 -1.1
939,124 + CCNA_00861 0.25 -0.5
939,132 - CCNA_00861 0.26 -0.5
939,132 - CCNA_00861 0.26 -0.9
939,132 - CCNA_00861 0.26 -0.2
939,171 + CCNA_00861 0.33 -2.1
939,171 + +1.3
939,204 + CCNA_00861 0.39 -1.3
939,212 - CCNA_00861 0.40 +0.9
939,240 + CCNA_00861 0.45 +0.1
939,248 - CCNA_00861 0.46 -0.9
939,248 - CCNA_00861 0.46 -0.5
939,248 - CCNA_00861 0.46 -0.8
939,248 - CCNA_00861 0.46 +0.3
939,282 + CCNA_00861 0.52 -0.7
939,309 - CCNA_00861 0.57 +0.4
939,323 - CCNA_00861 0.59 +0.0
939,374 + CCNA_00861 0.68 +0.0
939,396 + CCNA_00861 0.72 +0.6
939,463 + CCNA_00861 0.84 -1.3
939,465 + CCNA_00861 0.84 +2.6
939,496 - CCNA_00861 0.89 -1.6
939,509 + +2.9
939,509 + -2.0
939,517 - +0.3
939,573 - -1.5
939,685 - +0.2
939,758 - -0.2
939,766 + +3.9
939,774 - +0.8
939,779 - +1.2
939,876 - CCNA_00862 0.10 +0.5
939,903 - CCNA_00862 0.12 +1.5
939,903 - CCNA_00862 0.12 +1.2
939,903 - CCNA_00862 0.12 +0.3
939,904 - CCNA_00862 0.12 +0.8
939,980 - CCNA_00862 0.16 -0.6
939,985 - CCNA_00862 0.16 +1.0
940,030 - CCNA_00862 0.19 -1.9
940,031 + CCNA_00862 0.19 +0.2
940,081 + CCNA_00862 0.22 +2.6
940,099 - CCNA_00862 0.23 +2.2
940,104 + CCNA_00862 0.23 -2.6
940,112 - CCNA_00862 0.23 -0.1
940,135 - CCNA_00862 0.25 +1.3
940,281 + CCNA_00862 0.33 +1.7
940,307 - CCNA_00862 0.34 +1.0
940,307 - CCNA_00862 0.34 +2.0
940,344 - CCNA_00862 0.36 -0.4
940,441 - CCNA_00862 0.42 +0.7
940,441 - CCNA_00862 0.42 -0.3
940,521 - CCNA_00862 0.46 -1.4
940,521 - CCNA_00862 0.46 +0.3
940,557 + CCNA_00862 0.48 +1.2
940,557 + CCNA_00862 0.48 -1.5
940,565 - CCNA_00862 0.49 -0.3
940,565 - CCNA_00862 0.49 -0.3
940,565 - CCNA_00862 0.49 +0.3
940,638 + CCNA_00862 0.53 +0.3
940,673 - CCNA_00862 0.55 +0.6
940,685 - CCNA_00862 0.56 +0.5
940,720 + CCNA_00862 0.58 +0.1
940,725 + CCNA_00862 0.58 -0.6
940,758 - CCNA_00862 0.60 -0.2
940,783 - CCNA_00862 0.61 +0.7
940,796 - CCNA_00862 0.62 -2.1
940,815 - CCNA_00862 0.63 +2.0
940,825 - CCNA_00862 0.64 -0.0
940,839 - CCNA_00862 0.64 +0.6
940,847 - CCNA_00862 0.65 -0.4
940,864 + CCNA_00862 0.66 -0.7
940,864 + CCNA_00862 0.66 -0.9
940,864 + CCNA_00862 0.66 -0.9
940,864 + CCNA_00862 0.66 -0.6
940,872 - CCNA_00862 0.66 -0.6
940,872 - CCNA_00862 0.66 -0.0
940,872 - CCNA_00862 0.66 -0.6
940,872 - CCNA_00862 0.66 -1.4
940,894 - CCNA_00862 0.67 -1.2
940,979 - CCNA_00862 0.72 +1.1
940,979 - CCNA_00862 0.72 -1.0
941,001 + CCNA_00862 0.73 -1.3
941,012 - CCNA_00862 0.74 +0.6
941,017 - CCNA_00862 0.74 -0.4
941,072 - CCNA_00862 0.77 +1.4
941,097 + CCNA_00862 0.79 -0.4
941,102 + CCNA_00862 0.79 +0.4
941,105 - CCNA_00862 0.79 -0.6
941,105 - CCNA_00862 0.79 +0.2
941,105 - CCNA_00862 0.79 +0.8
941,105 - CCNA_00862 0.79 +0.6
941,113 - CCNA_00862 0.80 +0.7
941,124 + CCNA_00862 0.80 -0.4
941,142 - CCNA_00862 0.81 +1.5
941,220 + CCNA_00862 0.86 +0.0
941,222 + CCNA_00862 0.86 +0.1
941,228 - CCNA_00862 0.86 -0.3
941,228 - CCNA_00862 0.86 +2.3
941,230 - CCNA_00862 0.86 +0.8
941,230 - CCNA_00862 0.86 +0.7
941,263 + CCNA_00862 0.88 -2.0
941,270 - CCNA_00862 0.89 +0.9
941,273 + CCNA_00862 0.89 -1.3
941,281 - CCNA_00862 0.89 +0.9
941,281 - CCNA_00862 0.89 +0.6
941,313 + +1.5
941,321 - +0.9
941,321 - +0.7
941,373 + -1.8
941,373 - +0.9
941,427 - -0.5
941,515 + -0.7
941,525 + +0.5
941,539 + +0.7
941,560 + CCNA_00863 0.11 +1.3
941,568 - CCNA_00863 0.12 +1.4
941,568 - CCNA_00863 0.12 -0.5
941,568 - CCNA_00863 0.12 +0.3
941,569 - CCNA_00863 0.12 +0.5
941,582 + CCNA_00863 0.14 -1.1
941,596 + CCNA_00863 0.15 -1.3
941,601 + CCNA_00863 0.16 -0.9
941,615 + CCNA_00863 0.17 -1.2
941,631 + CCNA_00863 0.19 -0.3
941,639 - CCNA_00863 0.20 +0.1
941,639 - CCNA_00863 0.20 -0.5
941,654 - CCNA_00863 0.22 +0.8
941,680 + CCNA_00863 0.25 +0.2
941,704 + CCNA_00863 0.28 -0.2
941,762 + CCNA_00863 0.34 +1.1
941,770 - CCNA_00863 0.35 +1.2
941,789 - CCNA_00863 0.37 -0.5
941,815 - CCNA_00863 0.40 -0.9
941,823 + CCNA_00863 0.41 +0.1
941,823 + CCNA_00863 0.41 +0.4
941,830 + CCNA_00863 0.42 -0.3
941,831 - +1.3
941,838 - CCNA_00863 0.43 +0.9
941,862 + CCNA_00863 0.46 +1.3
941,863 + CCNA_00863 0.46 -0.5
941,871 - CCNA_00863 0.47 -0.6
941,903 - CCNA_00863 0.50 -1.2
941,938 + CCNA_00863 0.54 -1.7
941,951 - CCNA_00863 0.56 -0.1
941,974 - CCNA_00863 0.59 +0.8
941,976 - CCNA_00863 0.59 -2.6
941,976 - CCNA_00863 0.59 -0.7
941,983 + CCNA_00863 0.60 +0.5
942,001 - CCNA_00863 0.62 +0.4
942,018 - CCNA_00863 0.64 +1.9
942,046 + CCNA_00863 0.67 -0.5
942,073 - CCNA_00863 0.70 +0.2
942,087 - CCNA_00863 0.72 +1.3
942,166 + CCNA_00863 0.81 -1.0
942,237 + CCNA_00863 0.89 +0.1
942,252 + +0.2
942,253 + +0.7
942,261 - -0.7
942,272 - -0.7
942,274 + +1.1
942,327 - -0.4
942,358 + -0.7
942,366 - +1.4
942,368 + +0.4
942,375 + -0.3
942,415 - +1.1
942,464 - -2.4

Or see this region's nucleotide sequence