Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00789

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00788 and CCNA_00789 are separated by 2 nucleotidesCCNA_00789 and CCNA_00790 are separated by 175 nucleotidesCCNA_00790 and CCNA_03939 are separated by 318 nucleotides CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870 _00788 CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523 _00789 CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076 _00790 CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685 _03939 Position (kb) 852 853 854Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 851.875 kb on - strand, within CCNA_00788at 851.888 kb on + strand, within CCNA_00788at 851.888 kb on + strand, within CCNA_00788at 851.891 kb on - strand, within CCNA_00788at 851.896 kb on - strand, within CCNA_00788at 851.898 kb on + strand, within CCNA_00788at 851.919 kb on + strand, within CCNA_00788at 851.919 kb on + strand, within CCNA_00788at 851.919 kb on + strand, within CCNA_00788at 851.927 kb on - strand, within CCNA_00788at 851.927 kb on - strand, within CCNA_00788at 851.953 kb on + strand, within CCNA_00788at 851.953 kb on + strand, within CCNA_00788at 851.953 kb on + strand, within CCNA_00788at 851.981 kb on + strand, within CCNA_00788at 851.989 kb on - strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.031 kb on - strand, within CCNA_00788at 852.031 kb on - strandat 852.050 kb on - strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.088 kb on - strand, within CCNA_00788at 852.088 kb on - strand, within CCNA_00788at 852.093 kb on - strand, within CCNA_00788at 852.095 kb on + strand, within CCNA_00788at 852.098 kb on - strand, within CCNA_00788at 852.103 kb on - strand, within CCNA_00788at 852.103 kb on - strand, within CCNA_00788at 852.206 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.266 kb on - strand, within CCNA_00788at 852.307 kb on + strand, within CCNA_00788at 852.307 kb on + strand, within CCNA_00788at 852.307 kb on + strand, within CCNA_00788at 852.314 kb on + strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.326 kb on - strand, within CCNA_00788at 852.327 kb on - strand, within CCNA_00788at 852.352 kb on - strand, within CCNA_00788at 852.360 kb on + strand, within CCNA_00788at 852.377 kb on + strand, within CCNA_00788at 852.387 kb on + strand, within CCNA_00788at 852.395 kb on - strand, within CCNA_00788at 852.425 kb on + strand, within CCNA_00788at 852.430 kb on + strand, within CCNA_00788at 852.447 kb on - strand, within CCNA_00788at 852.481 kb on - strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.506 kb on - strand, within CCNA_00788at 852.516 kb on - strand, within CCNA_00788at 852.563 kb on + strand, within CCNA_00788at 852.568 kb on + strand, within CCNA_00788at 852.574 kb on + strand, within CCNA_00788at 852.582 kb on - strand, within CCNA_00788at 852.612 kb on + strand, within CCNA_00788at 852.628 kb on + strand, within CCNA_00788at 852.629 kb on - strand, within CCNA_00788at 852.631 kb on - strand, within CCNA_00788at 852.675 kb on - strand, within CCNA_00788at 852.677 kb on - strand, within CCNA_00788at 852.684 kb on - strand, within CCNA_00788at 852.709 kb on - strand, within CCNA_00788at 852.719 kb on + strand, within CCNA_00788at 852.765 kb on + strandat 852.765 kb on + strandat 852.773 kb on - strandat 852.800 kb on - strandat 852.802 kb on + strandat 852.838 kb on + strandat 852.838 kb on + strandat 852.838 kb on + strandat 852.846 kb on - strandat 852.856 kb on - strandat 852.863 kb on + strandat 852.870 kb on + strandat 852.911 kb on + strandat 852.914 kb on - strandat 852.939 kb on + strand, within CCNA_00789at 852.946 kb on + strand, within CCNA_00789at 852.947 kb on - strand, within CCNA_00789at 852.995 kb on + strand, within CCNA_00789at 853.077 kb on + strand, within CCNA_00789at 853.084 kb on + strand, within CCNA_00789at 853.095 kb on + strand, within CCNA_00789at 853.095 kb on + strand, within CCNA_00789at 853.103 kb on - strand, within CCNA_00789at 853.103 kb on - strand, within CCNA_00789at 853.114 kb on + strand, within CCNA_00789at 853.186 kb on + strand, within CCNA_00789at 853.261 kb on + strand, within CCNA_00789at 853.269 kb on - strand, within CCNA_00789at 853.357 kb on - strand, within CCNA_00789at 853.414 kb on - strand, within CCNA_00789at 853.461 kb on + strandat 853.497 kb on - strandat 853.528 kb on - strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.595 kb on + strandat 853.598 kb on - strandat 853.598 kb on - strandat 853.627 kb on - strandat 853.632 kb on + strandat 853.634 kb on + strandat 853.642 kb on - strandat 853.717 kb on - strandat 853.764 kb on + strand, within CCNA_00790at 853.772 kb on - strand, within CCNA_00790at 853.809 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.844 kb on + strand, within CCNA_00790at 853.854 kb on - strand, within CCNA_00790at 853.864 kb on - strand, within CCNA_00790at 853.937 kb on + strand, within CCNA_00790at 853.941 kb on + strand, within CCNA_00790at 853.981 kb on - strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 854.076 kb on + strandat 854.078 kb on + strandat 854.118 kb on - strandat 854.130 kb on - strandat 854.130 kb on - strandat 854.138 kb on + strandat 854.146 kb on - strandat 854.153 kb on + strandat 854.173 kb on - strandat 854.187 kb on + strandat 854.226 kb on + strandat 854.255 kb on - strandat 854.272 kb on + strandat 854.272 kb on + strandat 854.275 kb on - strandat 854.322 kb on - strandat 854.326 kb on + strandat 854.349 kb on + strandat 854.352 kb on - strandat 854.357 kb on - strandat 854.357 kb on - strandat 854.357 kb on - strandat 854.370 kb on - strandat 854.375 kb on + strandat 854.383 kb on - strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.427 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.447 kb on - strand, within CCNA_03939at 854.498 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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851,875 - CCNA_00788 0.24 -0.6
851,888 + CCNA_00788 0.25 -0.5
851,888 + CCNA_00788 0.25 -1.3
851,891 - CCNA_00788 0.26 +0.7
851,896 - CCNA_00788 0.26 -0.4
851,898 + CCNA_00788 0.26 -1.2
851,919 + CCNA_00788 0.28 -1.0
851,919 + CCNA_00788 0.28 +0.3
851,919 + CCNA_00788 0.28 +0.7
851,927 - CCNA_00788 0.28 +0.5
851,927 - CCNA_00788 0.28 +1.1
851,953 + CCNA_00788 0.30 +1.3
851,953 + CCNA_00788 0.30 -1.0
851,953 + CCNA_00788 0.30 +0.7
851,981 + CCNA_00788 0.32 -1.2
851,989 - CCNA_00788 0.33 +0.7
852,023 + CCNA_00788 0.36 +0.0
852,023 + CCNA_00788 0.36 -1.3
852,023 + CCNA_00788 0.36 -1.3
852,023 + CCNA_00788 0.36 -0.2
852,023 + CCNA_00788 0.36 -0.0
852,023 + CCNA_00788 0.36 +0.0
852,031 - CCNA_00788 0.36 -1.3
852,031 - +2.0
852,050 - CCNA_00788 0.38 -0.8
852,080 + CCNA_00788 0.40 +0.5
852,080 + CCNA_00788 0.40 +1.0
852,080 + CCNA_00788 0.40 +0.7
852,088 - CCNA_00788 0.41 +0.9
852,088 - CCNA_00788 0.41 -0.9
852,093 - CCNA_00788 0.41 -0.1
852,095 + CCNA_00788 0.41 +0.1
852,098 - CCNA_00788 0.41 -0.2
852,103 - CCNA_00788 0.42 -0.1
852,103 - CCNA_00788 0.42 -0.5
852,206 + CCNA_00788 0.50 +0.6
852,258 + CCNA_00788 0.53 -1.8
852,258 + CCNA_00788 0.53 +0.6
852,258 + CCNA_00788 0.53 +0.3
852,258 + CCNA_00788 0.53 +1.1
852,258 + CCNA_00788 0.53 -1.4
852,266 - CCNA_00788 0.54 -0.8
852,307 + CCNA_00788 0.57 -1.9
852,307 + CCNA_00788 0.57 -1.0
852,307 + CCNA_00788 0.57 +1.1
852,314 + CCNA_00788 0.58 +1.2
852,315 - CCNA_00788 0.58 +0.2
852,315 - CCNA_00788 0.58 -0.9
852,315 - CCNA_00788 0.58 +1.2
852,315 - CCNA_00788 0.58 -0.2
852,326 - CCNA_00788 0.59 -0.6
852,327 - CCNA_00788 0.59 -0.5
852,352 - CCNA_00788 0.61 +0.2
852,360 + CCNA_00788 0.61 -1.1
852,377 + CCNA_00788 0.62 -1.3
852,387 + CCNA_00788 0.63 -1.0
852,395 - CCNA_00788 0.64 +0.8
852,425 + CCNA_00788 0.66 -1.1
852,430 + CCNA_00788 0.67 +2.0
852,447 - CCNA_00788 0.68 -1.6
852,481 - CCNA_00788 0.70 -1.1
852,498 + CCNA_00788 0.72 -0.5
852,498 + CCNA_00788 0.72 +1.3
852,498 + CCNA_00788 0.72 -1.4
852,498 + CCNA_00788 0.72 -1.7
852,498 + CCNA_00788 0.72 -0.6
852,506 - CCNA_00788 0.72 -0.1
852,516 - CCNA_00788 0.73 -0.2
852,563 + CCNA_00788 0.77 -1.7
852,568 + CCNA_00788 0.77 -0.2
852,574 + CCNA_00788 0.77 +0.4
852,582 - CCNA_00788 0.78 -1.3
852,612 + CCNA_00788 0.80 +1.3
852,628 + CCNA_00788 0.82 +0.2
852,629 - CCNA_00788 0.82 -0.3
852,631 - CCNA_00788 0.82 +0.6
852,675 - CCNA_00788 0.85 -1.5
852,677 - CCNA_00788 0.85 +0.5
852,684 - CCNA_00788 0.86 -0.8
852,709 - CCNA_00788 0.88 -0.2
852,719 + CCNA_00788 0.88 +0.9
852,765 + -0.3
852,765 + +0.4
852,773 - +0.0
852,800 - +0.5
852,802 + -1.7
852,838 + +0.4
852,838 + +0.6
852,838 + -0.6
852,846 - +0.2
852,856 - -0.0
852,863 + -0.4
852,870 + -1.1
852,911 + -0.1
852,914 - -0.6
852,939 + CCNA_00789 0.10 +0.1
852,946 + CCNA_00789 0.11 +1.4
852,947 - CCNA_00789 0.11 -0.1
852,995 + CCNA_00789 0.19 +0.1
853,077 + CCNA_00789 0.31 -1.1
853,084 + CCNA_00789 0.32 +0.1
853,095 + CCNA_00789 0.34 -1.3
853,095 + CCNA_00789 0.34 +1.4
853,103 - CCNA_00789 0.35 -0.2
853,103 - CCNA_00789 0.35 -1.0
853,114 + CCNA_00789 0.37 +0.8
853,186 + CCNA_00789 0.48 +0.0
853,261 + CCNA_00789 0.60 -0.1
853,269 - CCNA_00789 0.61 +0.4
853,357 - CCNA_00789 0.74 -0.3
853,414 - CCNA_00789 0.83 -1.0
853,461 + -0.6
853,497 - +1.7
853,528 - +1.2
853,590 + -1.1
853,590 + +1.2
853,590 + +0.7
853,595 + -0.6
853,598 - +1.0
853,598 - -1.3
853,627 - +1.4
853,632 + +0.7
853,634 + -0.2
853,642 - +0.4
853,717 - -0.8
853,764 + CCNA_00790 0.17 -0.8
853,772 - CCNA_00790 0.19 +0.8
853,809 + CCNA_00790 0.29 +0.2
853,811 + CCNA_00790 0.30 -0.1
853,811 + CCNA_00790 0.30 +0.1
853,811 + CCNA_00790 0.30 -0.6
853,819 - CCNA_00790 0.32 +0.5
853,819 - CCNA_00790 0.32 +0.1
853,844 + CCNA_00790 0.38 +1.0
853,854 - CCNA_00790 0.41 -0.1
853,864 - CCNA_00790 0.44 -0.5
853,937 + CCNA_00790 0.63 -0.2
853,941 + CCNA_00790 0.64 +0.8
853,981 - CCNA_00790 0.75 +0.7
853,988 + CCNA_00790 0.76 +0.8
853,988 + CCNA_00790 0.76 +0.2
853,988 + CCNA_00790 0.76 -0.0
854,076 + -0.3
854,078 + -1.0
854,118 - +2.0
854,130 - -0.5
854,130 - +0.7
854,138 + +1.0
854,146 - -0.7
854,153 + -0.5
854,173 - +0.1
854,187 + +0.3
854,226 + +1.2
854,255 - -0.8
854,272 + +1.4
854,272 + +0.5
854,275 - +0.7
854,322 - +0.1
854,326 + -1.3
854,349 + +0.1
854,352 - +0.1
854,357 - -0.2
854,357 - +0.5
854,357 - -1.5
854,370 - -1.5
854,375 + -0.8
854,383 - +1.0
854,405 + +0.1
854,405 + +0.3
854,413 - +0.2
854,413 - -0.4
854,413 - +0.5
854,413 - -0.2
854,413 - -1.8
854,413 - +1.2
854,427 - CCNA_03939 0.11 -2.8
854,437 - CCNA_03939 0.14 +1.2
854,437 - CCNA_03939 0.14 +0.1
854,437 - CCNA_03939 0.14 -0.3
854,437 - CCNA_03939 0.14 +0.5
854,447 - CCNA_03939 0.18 +1.7
854,498 + CCNA_03939 0.35 +2.6
854,499 + CCNA_03939 0.36 +0.5

Or see this region's nucleotide sequence