Experiment: PYE with Gentamicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00740 and CCNA_00741 overlap by 1 nucleotides CCNA_00741 and CCNA_00742 are separated by 57 nucleotides CCNA_00742 and CCNA_00743 are separated by 146 nucleotides CCNA_00743 and CCNA_00744 are separated by 241 nucleotides
CCNA_00740: CCNA_00740 - riboflavin kinase/FMN adenylyltransferase, at 798,513 to 799,454
_00740
CCNA_00741: CCNA_00741 - 3-hydroxybutyryl-CoA dehydratase, at 799,454 to 799,879
_00741
CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797
_00742
CCNA_00743: CCNA_00743 - NnrU family membrane protein, at 800,944 to 801,510
_00743
CCNA_00744: CCNA_00744 - GIY-YIG endonuclease domain protein, at 801,752 to 802,036
_00744
Position (kb) 799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.481 kb on - strand at 799.516 kb on - strand, within CCNA_00741 at 799.517 kb on - strand, within CCNA_00741 at 799.543 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.607 kb on - strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.630 kb on + strand, within CCNA_00741 at 799.632 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.638 kb on - strand, within CCNA_00741 at 799.660 kb on + strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.689 kb on - strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.725 kb on + strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.730 kb on + strand, within CCNA_00741 at 799.753 kb on - strand, within CCNA_00741 at 799.772 kb on - strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.808 kb on - strand, within CCNA_00741 at 799.863 kb on + strand at 799.881 kb on - strand at 799.885 kb on + strand at 799.909 kb on + strand at 799.912 kb on - strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.917 kb on - strand at 799.917 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.946 kb on - strand at 799.979 kb on - strand at 799.985 kb on + strand at 799.985 kb on - strand at 799.993 kb on - strand at 800.054 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.198 kb on + strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.261 kb on - strand, within CCNA_00742 at 800.302 kb on - strand, within CCNA_00742 at 800.317 kb on - strand, within CCNA_00742 at 800.330 kb on - strand, within CCNA_00742 at 800.332 kb on - strand, within CCNA_00742 at 800.352 kb on + strand, within CCNA_00742 at 800.360 kb on - strand, within CCNA_00742 at 800.394 kb on + strand, within CCNA_00742 at 800.402 kb on - strand, within CCNA_00742 at 800.417 kb on - strand, within CCNA_00742 at 800.425 kb on - strand, within CCNA_00742 at 800.438 kb on - strand, within CCNA_00742 at 800.460 kb on - strand, within CCNA_00742 at 800.471 kb on - strand, within CCNA_00742 at 800.473 kb on - strand, within CCNA_00742 at 800.502 kb on + strand, within CCNA_00742 at 800.514 kb on + strand, within CCNA_00742 at 800.520 kb on + strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.568 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.629 kb on + strand, within CCNA_00742 at 800.655 kb on + strand, within CCNA_00742 at 800.660 kb on + strand, within CCNA_00742 at 800.663 kb on - strand, within CCNA_00742 at 800.668 kb on - strand, within CCNA_00742 at 800.693 kb on - strand, within CCNA_00742 at 800.702 kb on + strand, within CCNA_00742 at 800.735 kb on - strand at 800.743 kb on + strand at 800.855 kb on + strand at 800.855 kb on + strand at 800.858 kb on - strand at 800.863 kb on - strand at 800.863 kb on - strand at 800.963 kb on + strand at 800.973 kb on + strand at 800.973 kb on + strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.990 kb on - strand at 800.992 kb on + strand at 801.039 kb on + strand, within CCNA_00743 at 801.039 kb on + strand, within CCNA_00743 at 801.091 kb on - strand, within CCNA_00743 at 801.130 kb on + strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.177 kb on - strand, within CCNA_00743 at 801.185 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.207 kb on - strand, within CCNA_00743 at 801.207 kb on - strand, within CCNA_00743 at 801.222 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.244 kb on - strand, within CCNA_00743 at 801.266 kb on + strand, within CCNA_00743 at 801.274 kb on - strand, within CCNA_00743 at 801.291 kb on + strand, within CCNA_00743 at 801.305 kb on - strand, within CCNA_00743 at 801.320 kb on - strand, within CCNA_00743 at 801.322 kb on - strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.342 kb on + strand, within CCNA_00743 at 801.342 kb on + strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.392 kb on + strand, within CCNA_00743 at 801.401 kb on + strand, within CCNA_00743 at 801.402 kb on + strand, within CCNA_00743 at 801.402 kb on + strand, within CCNA_00743 at 801.410 kb on - strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.435 kb on + strand, within CCNA_00743 at 801.438 kb on - strand, within CCNA_00743 at 801.443 kb on - strand, within CCNA_00743 at 801.469 kb on + strand at 801.483 kb on + strand at 801.506 kb on + strand at 801.556 kb on + strand at 801.564 kb on + strand at 801.564 kb on + strand at 801.572 kb on - strand at 801.572 kb on - strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.604 kb on - strand at 801.604 kb on - strand at 801.604 kb on - strand at 801.623 kb on - strand at 801.628 kb on - strand at 801.628 kb on - strand at 801.628 kb on - strand at 801.643 kb on + strand at 801.666 kb on + strand at 801.669 kb on - strand at 801.674 kb on - strand at 801.764 kb on + strand at 801.764 kb on + strand at 801.777 kb on - strand at 801.797 kb on + strand, within CCNA_00744
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml remove 799,441 + +1.4 799,441 + -1.2 799,441 + -0.2 799,441 + +1.0 799,449 - +1.6 799,449 - -0.5 799,481 - +0.2 799,516 - CCNA_00741 0.15 +1.3 799,517 - CCNA_00741 0.15 +0.5 799,543 - CCNA_00741 0.21 -0.3 799,552 - CCNA_00741 0.23 +0.7 799,552 - CCNA_00741 0.23 +0.1 799,607 - CCNA_00741 0.36 +1.5 799,626 + CCNA_00741 0.40 -1.8 799,626 + CCNA_00741 0.40 -1.2 799,626 + CCNA_00741 0.40 -0.1 799,626 + CCNA_00741 0.40 +0.2 799,626 + CCNA_00741 0.40 -0.2 799,630 + CCNA_00741 0.41 +0.2 799,632 - CCNA_00741 0.42 +0.7 799,634 - CCNA_00741 0.42 +1.4 799,634 - CCNA_00741 0.42 +0.4 799,634 - CCNA_00741 0.42 +0.4 799,634 - CCNA_00741 0.42 +1.7 799,638 - CCNA_00741 0.43 +0.9 799,660 + CCNA_00741 0.48 +0.0 799,670 - CCNA_00741 0.51 +0.1 799,670 - CCNA_00741 0.51 +2.2 799,670 - CCNA_00741 0.51 -0.4 799,689 - CCNA_00741 0.55 +0.9 799,720 + CCNA_00741 0.62 +0.0 799,720 + CCNA_00741 0.62 +0.3 799,725 + CCNA_00741 0.64 -0.1 799,728 - CCNA_00741 0.64 +0.2 799,728 - CCNA_00741 0.64 +0.2 799,730 + CCNA_00741 0.65 -0.3 799,753 - CCNA_00741 0.70 +0.8 799,772 - CCNA_00741 0.75 -0.7 799,783 + CCNA_00741 0.77 +1.4 799,783 + CCNA_00741 0.77 -0.7 799,808 - CCNA_00741 0.83 +1.0 799,863 + -1.7 799,881 - -0.2 799,885 + +0.1 799,909 + -0.9 799,912 - +0.4 799,914 + +0.4 799,914 + -0.1 799,914 + -1.4 799,914 + -0.0 799,914 + -1.9 799,917 - +1.2 799,917 - +0.6 799,922 - +1.3 799,922 - +1.6 799,922 - +1.5 799,922 - +1.4 799,946 - +0.5 799,979 - -1.6 799,985 + +0.9 799,985 - -1.5 799,993 - +0.4 800,054 + CCNA_00742 0.14 +0.4 800,097 + CCNA_00742 0.19 -0.3 800,193 + CCNA_00742 0.30 +0.9 800,198 + CCNA_00742 0.30 +1.2 800,211 - CCNA_00742 0.32 -0.4 800,211 - CCNA_00742 0.32 -0.6 800,261 - CCNA_00742 0.38 -1.4 800,302 - CCNA_00742 0.42 -2.8 800,317 - CCNA_00742 0.44 -0.0 800,330 - CCNA_00742 0.46 +0.4 800,332 - CCNA_00742 0.46 +1.0 800,352 + CCNA_00742 0.48 +0.3 800,360 - CCNA_00742 0.49 -1.6 800,394 + CCNA_00742 0.53 -0.4 800,402 - CCNA_00742 0.54 -0.3 800,417 - CCNA_00742 0.56 -0.3 800,425 - CCNA_00742 0.57 -0.3 800,438 - CCNA_00742 0.58 -0.6 800,460 - CCNA_00742 0.61 -0.2 800,471 - CCNA_00742 0.62 -1.4 800,473 - CCNA_00742 0.62 -0.0 800,502 + CCNA_00742 0.66 +0.2 800,514 + CCNA_00742 0.67 -0.2 800,520 + CCNA_00742 0.68 -0.2 800,528 - CCNA_00742 0.69 -0.2 800,555 + CCNA_00742 0.72 +0.4 800,555 + CCNA_00742 0.72 -0.1 800,568 - CCNA_00742 0.73 -0.8 800,600 - CCNA_00742 0.77 -0.6 800,600 - CCNA_00742 0.77 -0.5 800,600 - CCNA_00742 0.77 -1.8 800,629 + CCNA_00742 0.80 -0.1 800,655 + CCNA_00742 0.83 +1.2 800,660 + CCNA_00742 0.84 +0.7 800,663 - CCNA_00742 0.84 +1.2 800,668 - CCNA_00742 0.85 +0.7 800,693 - CCNA_00742 0.88 -0.9 800,702 + CCNA_00742 0.89 +0.7 800,735 - -0.4 800,743 + +1.4 800,855 + +0.1 800,855 + +1.2 800,858 - -2.0 800,863 - -0.4 800,863 - -2.9 800,963 + -0.5 800,973 + +0.6 800,973 + -1.6 800,981 - +0.4 800,981 - +1.7 800,981 - -0.5 800,990 - -0.8 800,992 + +0.2 801,039 + CCNA_00743 0.17 -0.6 801,039 + CCNA_00743 0.17 +0.7 801,091 - CCNA_00743 0.26 -0.4 801,130 + CCNA_00743 0.33 +0.6 801,135 + CCNA_00743 0.34 +0.3 801,135 + CCNA_00743 0.34 +0.6 801,177 - CCNA_00743 0.41 -0.9 801,185 + CCNA_00743 0.43 +0.7 801,199 + CCNA_00743 0.45 -1.0 801,199 + CCNA_00743 0.45 +0.1 801,199 + CCNA_00743 0.45 +0.1 801,207 - CCNA_00743 0.46 -0.7 801,207 - CCNA_00743 0.46 +0.0 801,222 + CCNA_00743 0.49 +0.9 801,231 + CCNA_00743 0.51 -0.3 801,231 + CCNA_00743 0.51 +0.5 801,231 + CCNA_00743 0.51 -0.5 801,231 + CCNA_00743 0.51 -2.5 801,231 + CCNA_00743 0.51 -0.1 801,239 - CCNA_00743 0.52 +0.4 801,239 - CCNA_00743 0.52 +0.1 801,239 - CCNA_00743 0.52 +0.1 801,239 - CCNA_00743 0.52 +0.3 801,239 - CCNA_00743 0.52 +0.9 801,244 - CCNA_00743 0.53 -0.8 801,266 + CCNA_00743 0.57 +0.2 801,274 - CCNA_00743 0.58 -0.4 801,291 + CCNA_00743 0.61 -0.0 801,305 - CCNA_00743 0.64 +0.8 801,320 - CCNA_00743 0.66 -1.6 801,322 - CCNA_00743 0.67 +1.4 801,337 + CCNA_00743 0.69 +0.4 801,342 + CCNA_00743 0.70 +1.0 801,342 + CCNA_00743 0.70 -0.2 801,345 - CCNA_00743 0.71 +0.0 801,345 - CCNA_00743 0.71 -0.5 801,392 + CCNA_00743 0.79 +0.0 801,401 + CCNA_00743 0.81 +0.5 801,402 + CCNA_00743 0.81 +1.0 801,402 + CCNA_00743 0.81 -0.4 801,410 - CCNA_00743 0.82 -0.1 801,418 + CCNA_00743 0.84 +1.3 801,418 + CCNA_00743 0.84 +0.0 801,418 + CCNA_00743 0.84 -0.2 801,435 + CCNA_00743 0.87 +0.3 801,438 - CCNA_00743 0.87 +0.7 801,443 - CCNA_00743 0.88 +1.2 801,469 + -1.7 801,483 + -0.5 801,506 + +0.4 801,556 + -0.9 801,564 + +0.2 801,564 + -0.7 801,572 - -1.6 801,572 - +0.2 801,596 + -0.1 801,596 + -0.6 801,596 + -1.3 801,604 - -0.8 801,604 - +2.1 801,604 - +0.4 801,623 - -1.2 801,628 - -1.0 801,628 - +0.7 801,628 - -0.1 801,643 + +1.8 801,666 + +1.2 801,669 - -1.3 801,674 - +0.4 801,764 + +0.1 801,764 + +0.1 801,777 - +0.0 801,797 + CCNA_00744 0.16 +0.3
Or see this region's nucleotide sequence