Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00699

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00698 and CCNA_00699 are separated by 265 nucleotidesCCNA_00699 and CCNA_00700 are separated by 718 nucleotides CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815 _00698 CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380 _00699 CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024 _00700 Position (kb) 758 759Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 757.091 kb on + strandat 757.092 kb on - strandat 757.148 kb on - strandat 757.376 kb on + strand, within CCNA_00698at 757.376 kb on + strand, within CCNA_00698at 757.376 kb on + strand, within CCNA_00698at 757.376 kb on + strand, within CCNA_00698at 757.384 kb on - strand, within CCNA_00698at 757.403 kb on + strand, within CCNA_00698at 757.437 kb on - strand, within CCNA_00698at 757.442 kb on + strand, within CCNA_00698at 757.449 kb on + strand, within CCNA_00698at 757.467 kb on - strand, within CCNA_00698at 757.467 kb on - strand, within CCNA_00698at 757.476 kb on + strand, within CCNA_00698at 757.515 kb on - strand, within CCNA_00698at 757.516 kb on + strand, within CCNA_00698at 757.524 kb on - strand, within CCNA_00698at 757.527 kb on + strand, within CCNA_00698at 757.552 kb on - strand, within CCNA_00698at 757.566 kb on - strand, within CCNA_00698at 757.571 kb on + strand, within CCNA_00698at 757.571 kb on + strand, within CCNA_00698at 757.579 kb on - strand, within CCNA_00698at 757.587 kb on - strand, within CCNA_00698at 757.596 kb on + strand, within CCNA_00698at 757.596 kb on + strand, within CCNA_00698at 757.626 kb on + strand, within CCNA_00698at 757.645 kb on + strand, within CCNA_00698at 757.653 kb on - strandat 757.663 kb on + strand, within CCNA_00698at 757.724 kb on + strand, within CCNA_00698at 757.732 kb on - strand, within CCNA_00698at 757.736 kb on + strand, within CCNA_00698at 757.746 kb on + strand, within CCNA_00698at 757.754 kb on - strandat 757.780 kb on + strandat 757.780 kb on + strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.826 kb on + strandat 757.830 kb on - strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.846 kb on - strandat 757.846 kb on - strandat 757.846 kb on - strandat 757.866 kb on + strandat 757.875 kb on - strandat 757.885 kb on - strandat 757.889 kb on - strandat 757.923 kb on + strandat 757.932 kb on - strandat 757.932 kb on - strandat 757.937 kb on - strandat 757.939 kb on + strandat 757.947 kb on - strandat 758.341 kb on + strand, within CCNA_00699at 758.341 kb on + strand, within CCNA_00699at 758.353 kb on + strandat 758.353 kb on + strandat 758.375 kb on + strandat 758.525 kb on + strandat 758.541 kb on - strandat 758.541 kb on - strandat 758.567 kb on - strandat 758.601 kb on - strandat 759.060 kb on + strandat 759.067 kb on + strandat 759.067 kb on + strandat 759.067 kb on + strandat 759.085 kb on - strandat 759.085 kb on - strandat 759.112 kb on + strandat 759.147 kb on + strandat 759.202 kb on - strandat 759.203 kb on + strandat 759.236 kb on + strandat 759.249 kb on + strandat 759.289 kb on - strandat 759.291 kb on - strandat 759.292 kb on + strand, within CCNA_00700at 759.300 kb on - strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.344 kb on + strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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757,091 + +0.7
757,092 - +0.8
757,148 - +0.6
757,376 + CCNA_00698 0.12 +1.0
757,376 + CCNA_00698 0.12 -1.6
757,376 + CCNA_00698 0.12 -0.8
757,376 + CCNA_00698 0.12 -0.1
757,384 - CCNA_00698 0.13 -0.1
757,403 + CCNA_00698 0.17 -0.5
757,437 - CCNA_00698 0.24 +2.1
757,442 + CCNA_00698 0.25 -2.1
757,449 + CCNA_00698 0.26 +0.8
757,467 - CCNA_00698 0.30 -0.2
757,467 - CCNA_00698 0.30 -1.8
757,476 + CCNA_00698 0.32 +0.0
757,515 - CCNA_00698 0.40 -2.1
757,516 + CCNA_00698 0.40 -1.5
757,524 - CCNA_00698 0.41 +0.2
757,527 + CCNA_00698 0.42 -1.8
757,552 - CCNA_00698 0.47 +0.3
757,566 - CCNA_00698 0.50 +0.3
757,571 + CCNA_00698 0.51 +1.3
757,571 + CCNA_00698 0.51 +0.6
757,579 - CCNA_00698 0.52 +1.7
757,587 - CCNA_00698 0.54 -0.2
757,596 + CCNA_00698 0.56 +0.4
757,596 + CCNA_00698 0.56 -1.3
757,626 + CCNA_00698 0.62 +1.7
757,645 + CCNA_00698 0.66 -1.3
757,653 - +2.1
757,663 + CCNA_00698 0.69 +0.9
757,724 + CCNA_00698 0.82 -1.2
757,732 - CCNA_00698 0.83 -0.1
757,736 + CCNA_00698 0.84 -0.3
757,746 + CCNA_00698 0.86 +2.1
757,754 - +1.3
757,780 + -0.8
757,780 + -0.0
757,788 - -0.3
757,788 - -1.1
757,788 - +0.7
757,788 - -0.8
757,788 - -0.2
757,788 - -2.2
757,788 - +1.0
757,788 - +0.2
757,788 - +0.8
757,826 + +0.7
757,830 - -1.4
757,838 + -2.3
757,838 + -1.2
757,838 + +0.8
757,838 + -1.7
757,838 + -0.1
757,838 + +1.0
757,846 - +1.8
757,846 - -1.9
757,846 - -1.0
757,866 + +0.2
757,875 - -1.8
757,885 - +0.9
757,889 - -0.6
757,923 + +0.3
757,932 - +0.5
757,932 - -1.2
757,937 - +1.4
757,939 + +1.6
757,947 - +1.1
758,341 + CCNA_00699 0.87 +4.1
758,341 + CCNA_00699 0.87 +4.0
758,353 + +4.9
758,353 + +4.4
758,375 + +3.9
758,525 + +0.7
758,541 - +0.8
758,541 - +1.2
758,567 - -0.7
758,601 - -0.3
759,060 + +0.4
759,067 + -0.7
759,067 + +0.8
759,067 + +1.3
759,085 - -2.2
759,085 - +0.2
759,112 + +1.4
759,147 + +3.2
759,202 - -0.7
759,203 + -0.0
759,236 + +0.8
759,249 + +0.4
759,289 - -1.1
759,291 - +0.3
759,292 + CCNA_00700 0.10 -1.7
759,300 - CCNA_00700 0.10 +0.9
759,339 + CCNA_00700 0.12 +0.9
759,339 + CCNA_00700 0.12 -0.0
759,339 + CCNA_00700 0.12 -0.3
759,339 + CCNA_00700 0.12 +0.0
759,339 + CCNA_00700 0.12 -1.5
759,339 + CCNA_00700 0.12 +0.5
759,339 + CCNA_00700 0.12 -0.6
759,339 + CCNA_00700 0.12 +0.6
759,339 + CCNA_00700 0.12 -0.8
759,339 + CCNA_00700 0.12 +1.2
759,339 + CCNA_00700 0.12 -1.3
759,339 + CCNA_00700 0.12 +0.9
759,339 + CCNA_00700 0.12 -0.5
759,339 + CCNA_00700 0.12 +1.1
759,339 + CCNA_00700 0.12 +0.8
759,339 + CCNA_00700 0.12 +0.4
759,344 + CCNA_00700 0.13 -0.4
759,347 - CCNA_00700 0.13 -0.5
759,347 - CCNA_00700 0.13 +2.0
759,347 - CCNA_00700 0.13 -0.9
759,347 - CCNA_00700 0.13 -0.3
759,347 - CCNA_00700 0.13 -1.0
759,347 - CCNA_00700 0.13 -1.1
759,347 - CCNA_00700 0.13 -1.2

Or see this region's nucleotide sequence