Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00518

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00516 and CCNA_00517 are separated by 2 nucleotidesCCNA_00517 and CCNA_00518 are separated by 87 nucleotidesCCNA_00518 and CCNA_00519 are separated by 157 nucleotides CCNA_00516: CCNA_00516 - integral membrane protein, at 531,683 to 532,432 _00516 CCNA_00517: CCNA_00517 - peptidyl-tRNA hydrolase, at 532,435 to 533,052 _00517 CCNA_00518: CCNA_00518 - LSU ribosomal protein L25P, at 533,140 to 533,733 _00518 CCNA_00519: CCNA_00519 - hypothetical protein, at 533,891 to 534,967 _00519 Position (kb) 533 534Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 532.177 kb on - strand, within CCNA_00516at 532.249 kb on - strand, within CCNA_00516at 532.266 kb on + strand, within CCNA_00516at 532.272 kb on + strand, within CCNA_00516at 532.275 kb on - strand, within CCNA_00516at 532.284 kb on - strand, within CCNA_00516at 532.298 kb on - strand, within CCNA_00516at 532.334 kb on + strand, within CCNA_00516at 532.337 kb on - strand, within CCNA_00516at 532.355 kb on + strand, within CCNA_00516at 532.355 kb on + strand, within CCNA_00516at 532.355 kb on + strand, within CCNA_00516at 532.363 kb on - strandat 532.383 kb on + strandat 532.403 kb on + strandat 532.461 kb on + strandat 532.461 kb on + strandat 532.461 kb on + strandat 532.474 kb on - strandat 532.501 kb on - strand, within CCNA_00517at 532.501 kb on - strand, within CCNA_00517at 532.501 kb on - strand, within CCNA_00517at 533.059 kb on + strandat 533.059 kb on + strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.069 kb on - strandat 533.137 kb on + strandat 533.183 kb on + strandat 533.183 kb on + strandat 533.191 kb on - strandat 533.191 kb on - strandat 533.191 kb on - strandat 533.191 kb on - strandat 533.342 kb on - strand, within CCNA_00518at 533.342 kb on - strand, within CCNA_00518at 533.342 kb on - strand, within CCNA_00518at 533.363 kb on - strand, within CCNA_00518at 533.363 kb on - strand, within CCNA_00518at 533.377 kb on - strand, within CCNA_00518at 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.922 kb on + strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.977 kb on + strandat 534.015 kb on - strand, within CCNA_00519at 534.015 kb on - strand, within CCNA_00519at 534.050 kb on - strand, within CCNA_00519at 534.061 kb on + strand, within CCNA_00519at 534.067 kb on + strand, within CCNA_00519at 534.067 kb on + strand, within CCNA_00519at 534.071 kb on + strand, within CCNA_00519at 534.074 kb on + strand, within CCNA_00519at 534.075 kb on - strand, within CCNA_00519at 534.118 kb on + strand, within CCNA_00519at 534.125 kb on - strand, within CCNA_00519at 534.125 kb on - strand, within CCNA_00519at 534.133 kb on + strand, within CCNA_00519at 534.154 kb on - strand, within CCNA_00519at 534.157 kb on + strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.204 kb on + strand, within CCNA_00519at 534.206 kb on + strand, within CCNA_00519at 534.237 kb on + strand, within CCNA_00519at 534.244 kb on - strand, within CCNA_00519at 534.245 kb on - strand, within CCNA_00519at 534.245 kb on - strand, within CCNA_00519at 534.247 kb on + strand, within CCNA_00519at 534.252 kb on + strand, within CCNA_00519at 534.273 kb on - strand, within CCNA_00519at 534.280 kb on + strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.303 kb on + strand, within CCNA_00519at 534.339 kb on + strand, within CCNA_00519at 534.349 kb on + strand, within CCNA_00519at 534.398 kb on + strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.437 kb on + strand, within CCNA_00519at 534.468 kb on + strand, within CCNA_00519at 534.468 kb on + strand, within CCNA_00519at 534.476 kb on - strand, within CCNA_00519at 534.509 kb on + strand, within CCNA_00519at 534.517 kb on - strand, within CCNA_00519at 534.535 kb on - strand, within CCNA_00519at 534.535 kb on - strand, within CCNA_00519at 534.542 kb on - strand, within CCNA_00519at 534.542 kb on - strand, within CCNA_00519at 534.614 kb on - strand, within CCNA_00519at 534.622 kb on - strand, within CCNA_00519at 534.635 kb on + strand, within CCNA_00519at 534.650 kb on + strand, within CCNA_00519at 534.678 kb on - strand, within CCNA_00519at 534.691 kb on + strand, within CCNA_00519at 534.696 kb on + strand, within CCNA_00519at 534.706 kb on - strand, within CCNA_00519

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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532,177 - CCNA_00516 0.66 -0.2
532,249 - CCNA_00516 0.75 +1.9
532,266 + CCNA_00516 0.78 +0.7
532,272 + CCNA_00516 0.79 -0.8
532,275 - CCNA_00516 0.79 +1.7
532,284 - CCNA_00516 0.80 +1.3
532,298 - CCNA_00516 0.82 -0.9
532,334 + CCNA_00516 0.87 +2.3
532,337 - CCNA_00516 0.87 +0.6
532,355 + CCNA_00516 0.90 -2.4
532,355 + CCNA_00516 0.90 +1.9
532,355 + CCNA_00516 0.90 +0.9
532,363 - +0.4
532,383 + -0.4
532,403 + +1.3
532,461 + +0.8
532,461 + +1.3
532,461 + +2.2
532,474 - +1.5
532,501 - CCNA_00517 0.11 +1.5
532,501 - CCNA_00517 0.11 -0.9
532,501 - CCNA_00517 0.11 +2.1
533,059 + -1.0
533,059 + -0.2
533,067 - +0.1
533,067 - -0.5
533,067 - +0.6
533,067 - +1.2
533,067 - +1.2
533,069 - +0.7
533,137 + +0.6
533,183 + +0.1
533,183 + -0.6
533,191 - +3.9
533,191 - +3.6
533,191 - +2.9
533,191 - +3.7
533,342 - CCNA_00518 0.34 +2.9
533,342 - CCNA_00518 0.34 +2.6
533,342 - CCNA_00518 0.34 +2.6
533,363 - CCNA_00518 0.38 +2.5
533,363 - CCNA_00518 0.38 +2.4
533,377 - CCNA_00518 0.40 +3.0
533,921 + -0.2
533,921 + +0.2
533,921 + -2.1
533,921 + +0.7
533,921 + -1.8
533,922 + -1.1
533,929 - +2.3
533,929 - +0.8
533,929 - +1.2
533,929 - +0.1
533,977 + +2.0
534,015 - CCNA_00519 0.12 +0.8
534,015 - CCNA_00519 0.12 +0.1
534,050 - CCNA_00519 0.15 +0.8
534,061 + CCNA_00519 0.16 -1.3
534,067 + CCNA_00519 0.16 -0.2
534,067 + CCNA_00519 0.16 -1.5
534,071 + CCNA_00519 0.17 +0.7
534,074 + CCNA_00519 0.17 +1.6
534,075 - CCNA_00519 0.17 +0.4
534,118 + CCNA_00519 0.21 -1.6
534,125 - CCNA_00519 0.22 +0.7
534,125 - CCNA_00519 0.22 +0.9
534,133 + CCNA_00519 0.22 -0.0
534,154 - CCNA_00519 0.24 -1.5
534,157 + CCNA_00519 0.25 -1.1
534,165 - CCNA_00519 0.25 +1.0
534,165 - CCNA_00519 0.25 +0.4
534,204 + CCNA_00519 0.29 +1.2
534,206 + CCNA_00519 0.29 -0.1
534,237 + CCNA_00519 0.32 +1.0
534,244 - CCNA_00519 0.33 -1.6
534,245 - CCNA_00519 0.33 -0.5
534,245 - CCNA_00519 0.33 +0.5
534,247 + CCNA_00519 0.33 -1.1
534,252 + CCNA_00519 0.34 -0.1
534,273 - CCNA_00519 0.35 -1.3
534,280 + CCNA_00519 0.36 +1.0
534,288 - CCNA_00519 0.37 -0.6
534,288 - CCNA_00519 0.37 +1.0
534,288 - CCNA_00519 0.37 +0.0
534,303 + CCNA_00519 0.38 -0.0
534,339 + CCNA_00519 0.42 +0.2
534,349 + CCNA_00519 0.43 -1.5
534,398 + CCNA_00519 0.47 -0.3
534,420 - CCNA_00519 0.49 +0.5
534,437 + CCNA_00519 0.51 +0.6
534,468 + CCNA_00519 0.54 -0.2
534,468 + CCNA_00519 0.54 +0.7
534,476 - CCNA_00519 0.54 -0.1
534,509 + CCNA_00519 0.57 +1.2
534,517 - CCNA_00519 0.58 -0.1
534,535 - CCNA_00519 0.60 +0.2
534,535 - CCNA_00519 0.60 +0.2
534,542 - CCNA_00519 0.60 +0.2
534,542 - CCNA_00519 0.60 +0.0
534,614 - CCNA_00519 0.67 +0.9
534,622 - CCNA_00519 0.68 +0.7
534,635 + CCNA_00519 0.69 -0.7
534,650 + CCNA_00519 0.70 +0.1
534,678 - CCNA_00519 0.73 +0.4
534,691 + CCNA_00519 0.74 +0.9
534,696 + CCNA_00519 0.75 -2.4
534,706 - CCNA_00519 0.76 -1.4

Or see this region's nucleotide sequence