Experiment: PYE with Gentamicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00459 and CCNA_00460 are separated by 461 nucleotides CCNA_00460 and CCNA_03921 are separated by 853 nucleotides
CCNA_00459: CCNA_00459 - Na+/H+ antiporter nhaA, at 471,542 to 472,783
_00459
CCNA_00460: CCNA_00460 - hypothetical protein, at 473,245 to 473,400
_00460
CCNA_03921: CCNA_03921 - UDP-glucose 6-dehydrogenase related protein, at 474,254 to 474,409
_03921
Position (kb) 473
474 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 472.248 kb on - strand, within CCNA_00459 at 472.248 kb on - strand, within CCNA_00459 at 472.265 kb on + strand, within CCNA_00459 at 472.265 kb on - strand, within CCNA_00459 at 472.276 kb on - strand, within CCNA_00459 at 472.325 kb on - strand, within CCNA_00459 at 472.329 kb on + strand, within CCNA_00459 at 472.396 kb on + strand, within CCNA_00459 at 472.402 kb on + strand, within CCNA_00459 at 472.402 kb on + strand, within CCNA_00459 at 472.422 kb on + strand, within CCNA_00459 at 472.428 kb on + strand, within CCNA_00459 at 472.435 kb on - strand, within CCNA_00459 at 472.438 kb on + strand, within CCNA_00459 at 472.438 kb on + strand, within CCNA_00459 at 472.470 kb on - strand, within CCNA_00459 at 472.470 kb on - strand, within CCNA_00459 at 472.490 kb on - strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.531 kb on + strand, within CCNA_00459 at 472.539 kb on - strand, within CCNA_00459 at 472.539 kb on - strand, within CCNA_00459 at 472.539 kb on - strand, within CCNA_00459 at 472.541 kb on - strand, within CCNA_00459 at 472.544 kb on + strand, within CCNA_00459 at 472.547 kb on - strand, within CCNA_00459 at 472.552 kb on - strand, within CCNA_00459 at 472.595 kb on - strand, within CCNA_00459 at 472.613 kb on + strand, within CCNA_00459 at 472.613 kb on - strand at 472.661 kb on + strand at 472.661 kb on + strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.669 kb on - strand at 472.684 kb on - strand at 472.698 kb on + strand at 472.730 kb on + strand at 472.730 kb on + strand at 472.738 kb on - strand at 472.748 kb on + strand at 472.778 kb on + strand at 472.784 kb on + strand at 472.813 kb on - strand at 472.875 kb on + strand at 472.889 kb on - strand at 472.960 kb on - strand at 472.977 kb on + strand at 472.992 kb on + strand at 472.992 kb on + strand at 472.999 kb on + strand at 473.000 kb on - strand at 473.047 kb on + strand at 473.125 kb on + strand at 473.161 kb on + strand at 473.169 kb on - strand at 473.205 kb on + strand at 473.205 kb on + strand at 473.205 kb on - strand at 473.227 kb on - strand at 473.227 kb on - strand at 473.234 kb on - strand at 473.250 kb on - strand at 473.252 kb on + strand at 473.260 kb on - strand at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.275 kb on + strand, within CCNA_00460 at 473.278 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.283 kb on - strand, within CCNA_00460 at 473.304 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.309 kb on + strand, within CCNA_00460 at 473.317 kb on - strand, within CCNA_00460 at 473.319 kb on + strand, within CCNA_00460 at 473.322 kb on - strand, within CCNA_00460 at 473.324 kb on + strand, within CCNA_00460 at 473.327 kb on - strand, within CCNA_00460 at 473.327 kb on - strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.345 kb on + strand, within CCNA_00460 at 473.353 kb on - strand, within CCNA_00460 at 473.353 kb on - strand, within CCNA_00460 at 473.388 kb on - strand at 473.392 kb on + strand at 473.474 kb on - strand at 473.501 kb on + strand at 473.501 kb on + strand at 473.509 kb on - strand at 473.563 kb on - strand at 473.573 kb on + strand at 473.586 kb on + strand at 473.588 kb on + strand at 473.596 kb on - strand at 473.637 kb on + strand at 473.656 kb on + strand at 473.664 kb on - strand at 473.665 kb on - strand at 473.669 kb on - strand at 473.885 kb on + strand at 473.898 kb on + strand at 473.939 kb on - strand at 473.942 kb on + strand at 473.943 kb on + strand at 473.950 kb on + strand at 473.951 kb on - strand at 473.951 kb on - strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.977 kb on + strand at 473.985 kb on - strand at 473.985 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.016 kb on - strand at 474.018 kb on + strand at 474.021 kb on - strand at 474.026 kb on - strand at 474.029 kb on + strand at 474.054 kb on + strand at 474.073 kb on + strand at 474.073 kb on + strand at 474.076 kb on - strand at 474.081 kb on - strand at 474.114 kb on + strand at 474.122 kb on - strand at 474.143 kb on - strand at 474.186 kb on + strand at 474.236 kb on + strand at 474.239 kb on - strand at 474.278 kb on + strand, within CCNA_03921 at 474.278 kb on + strand, within CCNA_03921 at 474.278 kb on + strand, within CCNA_03921 at 474.286 kb on - strand, within CCNA_03921 at 474.300 kb on - strand, within CCNA_03921 at 474.300 kb on - strand, within CCNA_03921 at 474.326 kb on + strand, within CCNA_03921 at 474.341 kb on + strand, within CCNA_03921 at 474.341 kb on + strand, within CCNA_03921
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml remove 472,248 - CCNA_00459 0.57 +0.1 472,248 - CCNA_00459 0.57 -0.5 472,265 + CCNA_00459 0.58 +3.4 472,265 - CCNA_00459 0.58 -1.3 472,276 - CCNA_00459 0.59 -2.2 472,325 - CCNA_00459 0.63 -0.4 472,329 + CCNA_00459 0.63 +3.6 472,396 + CCNA_00459 0.69 +2.4 472,402 + CCNA_00459 0.69 +2.2 472,402 + CCNA_00459 0.69 +2.8 472,422 + CCNA_00459 0.71 +5.1 472,428 + CCNA_00459 0.71 +4.1 472,435 - CCNA_00459 0.72 +0.5 472,438 + CCNA_00459 0.72 +3.8 472,438 + CCNA_00459 0.72 +4.1 472,470 - CCNA_00459 0.75 +1.0 472,470 - CCNA_00459 0.75 +1.0 472,490 - CCNA_00459 0.76 +0.5 472,531 + CCNA_00459 0.80 +3.2 472,531 + CCNA_00459 0.80 +3.3 472,531 + CCNA_00459 0.80 +3.1 472,531 + CCNA_00459 0.80 +4.0 472,531 + CCNA_00459 0.80 +3.2 472,531 + CCNA_00459 0.80 +3.2 472,531 + CCNA_00459 0.80 +2.9 472,539 - CCNA_00459 0.80 +1.0 472,539 - CCNA_00459 0.80 +0.0 472,539 - CCNA_00459 0.80 +0.0 472,541 - CCNA_00459 0.80 +0.5 472,544 + CCNA_00459 0.81 +1.1 472,547 - CCNA_00459 0.81 +0.9 472,552 - CCNA_00459 0.81 +0.2 472,595 - CCNA_00459 0.85 +0.0 472,613 + CCNA_00459 0.86 +2.1 472,613 - +1.4 472,661 + +2.8 472,661 + +2.9 472,669 - +0.7 472,669 - +1.5 472,669 - +0.3 472,669 - -0.4 472,669 - +0.4 472,684 - +0.3 472,698 + -0.5 472,730 + +0.0 472,730 + +0.9 472,738 - -0.4 472,748 + +0.1 472,778 + -0.1 472,784 + +0.2 472,813 - -0.7 472,875 + +2.2 472,889 - -1.0 472,960 - +1.4 472,977 + +1.4 472,992 + +1.4 472,992 + +0.5 472,999 + -0.4 473,000 - +0.1 473,047 + -1.7 473,125 + -1.3 473,161 + +0.6 473,169 - +0.6 473,205 + +0.4 473,205 + +1.0 473,205 - -0.5 473,227 - +1.4 473,227 - -0.9 473,234 - +1.2 473,250 - +0.1 473,252 + -1.2 473,260 - -0.5 473,275 + CCNA_00460 0.19 -1.7 473,275 + CCNA_00460 0.19 +0.1 473,275 + CCNA_00460 0.19 +0.5 473,275 + CCNA_00460 0.19 -0.1 473,275 + CCNA_00460 0.19 -1.2 473,275 + CCNA_00460 0.19 +2.7 473,278 - CCNA_00460 0.21 -1.4 473,283 - CCNA_00460 0.24 -0.1 473,283 - CCNA_00460 0.24 +0.0 473,283 - CCNA_00460 0.24 +0.7 473,304 + CCNA_00460 0.38 -1.1 473,309 + CCNA_00460 0.41 -0.9 473,309 + CCNA_00460 0.41 -1.6 473,309 + CCNA_00460 0.41 -1.9 473,317 - CCNA_00460 0.46 -1.1 473,319 + CCNA_00460 0.47 -1.4 473,322 - CCNA_00460 0.49 +1.1 473,324 + CCNA_00460 0.51 +0.4 473,327 - CCNA_00460 0.53 +1.9 473,327 - CCNA_00460 0.53 -1.6 473,345 + CCNA_00460 0.64 -0.3 473,345 + CCNA_00460 0.64 +0.5 473,345 + CCNA_00460 0.64 -1.4 473,345 + CCNA_00460 0.64 -0.2 473,353 - CCNA_00460 0.69 -0.1 473,353 - CCNA_00460 0.69 -1.4 473,388 - -0.0 473,392 + -0.3 473,474 - +1.0 473,501 + -0.5 473,501 + -0.6 473,509 - -1.7 473,563 - +0.9 473,573 + -1.4 473,586 + -0.5 473,588 + -0.2 473,596 - -0.4 473,637 + +0.8 473,656 + +0.9 473,664 - -0.8 473,665 - +0.9 473,669 - -0.6 473,885 + +0.6 473,898 + +1.1 473,939 - -1.3 473,942 + +0.5 473,943 + +0.7 473,950 + +1.9 473,951 - +1.7 473,951 - -2.7 473,977 + +2.3 473,977 + -0.6 473,977 + +0.7 473,977 + +0.1 473,977 + +0.0 473,977 + -0.4 473,985 - +0.5 473,985 - -1.2 474,016 - -1.0 474,016 - +1.3 474,016 - +0.4 474,016 - +1.2 474,018 + +1.9 474,021 - +0.4 474,026 - -0.4 474,029 + +1.2 474,054 + +0.0 474,073 + +1.6 474,073 + -0.5 474,076 - -0.8 474,081 - -1.3 474,114 + +0.6 474,122 - -0.6 474,143 - -0.3 474,186 + +1.1 474,236 + +2.1 474,239 - +0.7 474,278 + CCNA_03921 0.15 -0.6 474,278 + CCNA_03921 0.15 +0.3 474,278 + CCNA_03921 0.15 +0.8 474,286 - CCNA_03921 0.21 -0.7 474,300 - CCNA_03921 0.29 -0.3 474,300 - CCNA_03921 0.29 -0.1 474,326 + CCNA_03921 0.46 -0.5 474,341 + CCNA_03921 0.56 -0.3 474,341 + CCNA_03921 0.56 -1.1
Or see this region's nucleotide sequence