Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00446

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00445 and CCNA_00446 are separated by 3 nucleotidesCCNA_00446 and CCNA_00447 overlap by 4 nucleotidesCCNA_00447 and CCNA_00448 are separated by 3 nucleotidesCCNA_00448 and CCNA_00449 are separated by 7 nucleotides CCNA_00445: CCNA_00445 - receiver domain-glutamate methylesterase cheBI, at 451,877 to 452,911 _00445 CCNA_00446: CCNA_00446 - chemotaxis receiver domain protein cheYII, at 452,915 to 453,304 _00446 CCNA_00447: CCNA_00447 - chemotaxis protein cheD, at 453,301 to 453,864 _00447 CCNA_00448: CCNA_00448 - cheU protein, at 453,868 to 454,251 _00448 CCNA_00449: CCNA_00449 - cheYIII, at 454,259 to 454,861 _00449 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 451.940 kb on + strandat 451.940 kb on + strandat 451.942 kb on + strandat 451.942 kb on + strandat 451.947 kb on + strandat 451.948 kb on - strandat 451.950 kb on - strandat 452.005 kb on - strand, within CCNA_00445at 452.008 kb on + strand, within CCNA_00445at 452.010 kb on - strand, within CCNA_00445at 452.015 kb on + strand, within CCNA_00445at 452.015 kb on + strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.025 kb on - strand, within CCNA_00445at 452.029 kb on + strand, within CCNA_00445at 452.038 kb on - strand, within CCNA_00445at 452.126 kb on + strand, within CCNA_00445at 452.126 kb on + strand, within CCNA_00445at 452.134 kb on - strand, within CCNA_00445at 452.134 kb on - strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.171 kb on - strand, within CCNA_00445at 452.171 kb on - strand, within CCNA_00445at 452.220 kb on + strand, within CCNA_00445at 452.226 kb on + strand, within CCNA_00445at 452.227 kb on - strand, within CCNA_00445at 452.228 kb on - strand, within CCNA_00445at 452.230 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.292 kb on - strand, within CCNA_00445at 452.294 kb on + strand, within CCNA_00445at 452.294 kb on + strand, within CCNA_00445at 452.299 kb on + strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.326 kb on + strand, within CCNA_00445at 452.339 kb on + strand, within CCNA_00445at 452.373 kb on + strand, within CCNA_00445at 452.408 kb on + strand, within CCNA_00445at 452.462 kb on - strand, within CCNA_00445at 452.466 kb on + strand, within CCNA_00445at 452.496 kb on + strand, within CCNA_00445at 452.503 kb on + strand, within CCNA_00445at 452.503 kb on + strand, within CCNA_00445at 452.512 kb on - strand, within CCNA_00445at 452.512 kb on - strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.546 kb on + strand, within CCNA_00445at 452.552 kb on - strand, within CCNA_00445at 452.553 kb on - strand, within CCNA_00445at 452.553 kb on - strand, within CCNA_00445at 452.554 kb on - strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.583 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.689 kb on + strand, within CCNA_00445at 452.708 kb on + strand, within CCNA_00445at 452.735 kb on + strand, within CCNA_00445at 452.740 kb on + strand, within CCNA_00445at 452.763 kb on - strand, within CCNA_00445at 452.769 kb on - strand, within CCNA_00445at 452.787 kb on - strand, within CCNA_00445at 452.793 kb on - strand, within CCNA_00445at 452.815 kb on + strandat 452.826 kb on + strandat 452.862 kb on - strandat 452.862 kb on - strandat 452.888 kb on + strandat 452.913 kb on - strandat 452.917 kb on + strandat 452.945 kb on - strandat 452.967 kb on - strand, within CCNA_00446at 453.013 kb on + strand, within CCNA_00446at 453.013 kb on + strand, within CCNA_00446at 453.023 kb on - strand, within CCNA_00446at 453.044 kb on + strand, within CCNA_00446at 453.052 kb on - strand, within CCNA_00446at 453.058 kb on + strand, within CCNA_00446at 453.060 kb on - strand, within CCNA_00446at 453.111 kb on + strand, within CCNA_00446at 453.116 kb on + strand, within CCNA_00446at 453.151 kb on + strand, within CCNA_00446at 453.195 kb on + strand, within CCNA_00446at 453.212 kb on + strand, within CCNA_00446at 453.212 kb on + strand, within CCNA_00446at 453.220 kb on - strand, within CCNA_00446at 453.232 kb on + strand, within CCNA_00446at 453.237 kb on + strand, within CCNA_00446at 453.244 kb on + strand, within CCNA_00446at 453.245 kb on - strand, within CCNA_00446at 453.247 kb on - strand, within CCNA_00446at 453.252 kb on - strand, within CCNA_00446at 453.252 kb on - strand, within CCNA_00446at 453.254 kb on + strand, within CCNA_00446at 453.262 kb on - strand, within CCNA_00446at 453.293 kb on - strandat 453.295 kb on + strandat 453.306 kb on - strandat 453.311 kb on - strandat 453.337 kb on + strandat 453.337 kb on + strandat 453.337 kb on + strandat 453.337 kb on + strandat 453.343 kb on + strandat 453.357 kb on + strandat 453.399 kb on - strand, within CCNA_00447at 453.413 kb on - strand, within CCNA_00447at 453.439 kb on + strand, within CCNA_00447at 453.439 kb on + strand, within CCNA_00447at 453.439 kb on + strand, within CCNA_00447at 453.463 kb on + strand, within CCNA_00447at 453.512 kb on - strand, within CCNA_00447at 453.516 kb on + strand, within CCNA_00447at 453.591 kb on + strand, within CCNA_00447at 453.592 kb on + strand, within CCNA_00447at 453.608 kb on + strand, within CCNA_00447at 453.618 kb on - strand, within CCNA_00447at 453.630 kb on + strand, within CCNA_00447at 453.637 kb on + strand, within CCNA_00447at 453.679 kb on + strand, within CCNA_00447at 453.702 kb on + strand, within CCNA_00447at 453.709 kb on - strand, within CCNA_00447at 453.719 kb on + strand, within CCNA_00447at 453.738 kb on + strand, within CCNA_00447at 453.738 kb on + strand, within CCNA_00447at 453.807 kb on + strand, within CCNA_00447at 453.809 kb on - strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.864 kb on + strandat 453.866 kb on - strandat 453.866 kb on - strandat 453.866 kb on - strandat 453.866 kb on - strandat 453.883 kb on + strandat 453.907 kb on + strand, within CCNA_00448at 453.918 kb on + strand, within CCNA_00448at 453.923 kb on - strand, within CCNA_00448at 453.979 kb on + strand, within CCNA_00448at 453.996 kb on + strand, within CCNA_00448at 453.996 kb on + strand, within CCNA_00448at 454.020 kb on - strand, within CCNA_00448at 454.046 kb on + strand, within CCNA_00448at 454.054 kb on - strand, within CCNA_00448at 454.056 kb on - strand, within CCNA_00448at 454.064 kb on + strand, within CCNA_00448at 454.121 kb on + strand, within CCNA_00448at 454.121 kb on + strand, within CCNA_00448at 454.121 kb on + strand, within CCNA_00448at 454.129 kb on + strand, within CCNA_00448at 454.129 kb on - strand, within CCNA_00448at 454.129 kb on - strand, within CCNA_00448at 454.163 kb on + strand, within CCNA_00448at 454.163 kb on + strand, within CCNA_00448at 454.163 kb on + strand, within CCNA_00448at 454.230 kb on - strandat 454.273 kb on + strandat 454.303 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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451,940 + +1.1
451,940 + +1.4
451,942 + +1.5
451,942 + +2.0
451,947 + +1.9
451,948 - -0.7
451,950 - -0.6
452,005 - CCNA_00445 0.12 -0.5
452,008 + CCNA_00445 0.13 +1.7
452,010 - CCNA_00445 0.13 +1.7
452,015 + CCNA_00445 0.13 +1.8
452,015 + CCNA_00445 0.13 +1.6
452,023 - CCNA_00445 0.14 -1.1
452,023 - CCNA_00445 0.14 -0.1
452,023 - CCNA_00445 0.14 +1.4
452,025 - CCNA_00445 0.14 +1.2
452,029 + CCNA_00445 0.15 +1.6
452,038 - CCNA_00445 0.16 -0.2
452,126 + CCNA_00445 0.24 +1.7
452,126 + CCNA_00445 0.24 +1.3
452,134 - CCNA_00445 0.25 +0.4
452,134 - CCNA_00445 0.25 +1.3
452,163 + CCNA_00445 0.28 +1.6
452,163 + CCNA_00445 0.28 +1.9
452,163 + CCNA_00445 0.28 +1.7
452,163 + CCNA_00445 0.28 +1.0
452,163 + CCNA_00445 0.28 +1.4
452,163 + CCNA_00445 0.28 +1.6
452,163 + CCNA_00445 0.28 +1.9
452,171 - CCNA_00445 0.28 +0.4
452,171 - CCNA_00445 0.28 -0.8
452,220 + CCNA_00445 0.33 +1.7
452,226 + CCNA_00445 0.34 +1.9
452,227 - CCNA_00445 0.34 -1.8
452,228 - CCNA_00445 0.34 -1.1
452,230 + CCNA_00445 0.34 +1.0
452,248 + CCNA_00445 0.36 +2.0
452,248 + CCNA_00445 0.36 +2.0
452,248 + CCNA_00445 0.36 +1.9
452,256 - CCNA_00445 0.37 -1.3
452,256 - CCNA_00445 0.37 -1.1
452,256 - CCNA_00445 0.37 -1.2
452,292 - CCNA_00445 0.40 +0.5
452,294 + CCNA_00445 0.40 +1.3
452,294 + CCNA_00445 0.40 +1.3
452,299 + CCNA_00445 0.41 +1.5
452,302 - CCNA_00445 0.41 -1.5
452,302 - CCNA_00445 0.41 -0.7
452,302 - CCNA_00445 0.41 -1.0
452,302 - CCNA_00445 0.41 -1.9
452,326 + CCNA_00445 0.43 +1.6
452,339 + CCNA_00445 0.45 +1.6
452,373 + CCNA_00445 0.48 +1.2
452,408 + CCNA_00445 0.51 +2.1
452,462 - CCNA_00445 0.57 -1.8
452,466 + CCNA_00445 0.57 +0.9
452,496 + CCNA_00445 0.60 +1.4
452,503 + CCNA_00445 0.60 +1.3
452,503 + CCNA_00445 0.60 +1.9
452,512 - CCNA_00445 0.61 +0.5
452,512 - CCNA_00445 0.61 +0.4
452,545 + CCNA_00445 0.65 +1.1
452,545 + CCNA_00445 0.65 +1.5
452,545 + CCNA_00445 0.65 +1.4
452,546 + CCNA_00445 0.65 +1.2
452,552 - CCNA_00445 0.65 +1.1
452,553 - CCNA_00445 0.65 -0.2
452,553 - CCNA_00445 0.65 -2.0
452,554 - CCNA_00445 0.65 -0.6
452,575 + CCNA_00445 0.67 +1.7
452,575 + CCNA_00445 0.67 +1.3
452,575 + CCNA_00445 0.67 +1.4
452,583 - CCNA_00445 0.68 -0.5
452,670 - CCNA_00445 0.77 +1.9
452,670 - CCNA_00445 0.77 -2.0
452,670 - CCNA_00445 0.77 -0.9
452,670 - CCNA_00445 0.77 +0.7
452,670 - CCNA_00445 0.77 -0.5
452,689 + CCNA_00445 0.78 +1.5
452,708 + CCNA_00445 0.80 +1.4
452,735 + CCNA_00445 0.83 +1.6
452,740 + CCNA_00445 0.83 +1.5
452,763 - CCNA_00445 0.86 -2.4
452,769 - CCNA_00445 0.86 +0.7
452,787 - CCNA_00445 0.88 -0.7
452,793 - CCNA_00445 0.89 -1.6
452,815 + +1.0
452,826 + +1.4
452,862 - -0.9
452,862 - +0.7
452,888 + +2.5
452,913 - +0.4
452,917 + +1.8
452,945 - +1.4
452,967 - CCNA_00446 0.13 +2.1
453,013 + CCNA_00446 0.25 +2.3
453,013 + CCNA_00446 0.25 +2.1
453,023 - CCNA_00446 0.28 -0.3
453,044 + CCNA_00446 0.33 +1.7
453,052 - CCNA_00446 0.35 +0.1
453,058 + CCNA_00446 0.37 +2.2
453,060 - CCNA_00446 0.37 -1.8
453,111 + CCNA_00446 0.50 +1.9
453,116 + CCNA_00446 0.52 +1.4
453,151 + CCNA_00446 0.61 +1.5
453,195 + CCNA_00446 0.72 +1.2
453,212 + CCNA_00446 0.76 +2.1
453,212 + CCNA_00446 0.76 +2.0
453,220 - CCNA_00446 0.78 -0.4
453,232 + CCNA_00446 0.81 +1.3
453,237 + CCNA_00446 0.83 +1.5
453,244 + CCNA_00446 0.84 +1.3
453,245 - CCNA_00446 0.85 -3.1
453,247 - CCNA_00446 0.85 -1.7
453,252 - CCNA_00446 0.86 -0.4
453,252 - CCNA_00446 0.86 -0.5
453,254 + CCNA_00446 0.87 +2.7
453,262 - CCNA_00446 0.89 +0.0
453,293 - -0.2
453,295 + +1.7
453,306 - -0.0
453,311 - -1.0
453,337 + +1.7
453,337 + +1.6
453,337 + +2.2
453,337 + +2.1
453,343 + +2.0
453,357 + +2.0
453,399 - CCNA_00447 0.17 +0.4
453,413 - CCNA_00447 0.20 -0.3
453,439 + CCNA_00447 0.24 +1.9
453,439 + CCNA_00447 0.24 +2.1
453,439 + CCNA_00447 0.24 +1.8
453,463 + CCNA_00447 0.29 +1.6
453,512 - CCNA_00447 0.37 -1.0
453,516 + CCNA_00447 0.38 +1.8
453,591 + CCNA_00447 0.51 +2.2
453,592 + CCNA_00447 0.52 +2.4
453,608 + CCNA_00447 0.54 +1.7
453,618 - CCNA_00447 0.56 -1.1
453,630 + CCNA_00447 0.58 +2.1
453,637 + CCNA_00447 0.60 +1.7
453,679 + CCNA_00447 0.67 +2.1
453,702 + CCNA_00447 0.71 +2.4
453,709 - CCNA_00447 0.72 +1.7
453,719 + CCNA_00447 0.74 +1.3
453,738 + CCNA_00447 0.77 +2.1
453,738 + CCNA_00447 0.77 +0.7
453,807 + CCNA_00447 0.90 +1.5
453,809 - -1.1
453,858 + +1.4
453,858 + -0.6
453,858 + +1.2
453,858 + +1.0
453,858 + +1.8
453,858 + +1.2
453,858 + +1.3
453,858 + +1.5
453,858 + +1.6
453,864 + +1.5
453,866 - -1.6
453,866 - +0.2
453,866 - -1.9
453,866 - -0.3
453,883 + +1.5
453,907 + CCNA_00448 0.10 +1.9
453,918 + CCNA_00448 0.13 +1.2
453,923 - CCNA_00448 0.14 -1.1
453,979 + CCNA_00448 0.29 +0.9
453,996 + CCNA_00448 0.33 +1.6
453,996 + CCNA_00448 0.33 +1.7
454,020 - CCNA_00448 0.40 +1.0
454,046 + CCNA_00448 0.46 +1.3
454,054 - CCNA_00448 0.48 -0.9
454,056 - CCNA_00448 0.49 -0.8
454,064 + CCNA_00448 0.51 +1.1
454,121 + CCNA_00448 0.66 +1.4
454,121 + CCNA_00448 0.66 +1.9
454,121 + CCNA_00448 0.66 +1.1
454,129 + CCNA_00448 0.68 +1.6
454,129 - CCNA_00448 0.68 +2.0
454,129 - CCNA_00448 0.68 +1.7
454,163 + CCNA_00448 0.77 +1.1
454,163 + CCNA_00448 0.77 +0.6
454,163 + CCNA_00448 0.77 +1.0
454,230 - -1.4
454,273 + +1.4
454,303 + +1.4

Or see this region's nucleotide sequence