Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00402

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00400 and CCNA_00401 overlap by 4 nucleotidesCCNA_00401 and CCNA_00402 are separated by 3 nucleotidesCCNA_00402 and CCNA_00403 are separated by 36 nucleotides CCNA_00400: CCNA_00400 - MarR/EmrR-family transcriptional regulator, at 418,061 to 418,504 _00400 CCNA_00401: CCNA_00401 - enoyl-CoA hydratase, at 418,501 to 419,271 _00401 CCNA_00402: CCNA_00402 - hypothetical protein, at 419,275 to 419,691 _00402 CCNA_00403: CCNA_00403 - short chain dehydrogenase, at 419,728 to 420,699 _00403 Position (kb) 419 420Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.293 kb on + strand, within CCNA_00400at 418.295 kb on - strand, within CCNA_00400at 418.295 kb on - strand, within CCNA_00400at 418.357 kb on + strand, within CCNA_00400at 418.365 kb on - strand, within CCNA_00400at 418.378 kb on + strand, within CCNA_00400at 418.378 kb on + strandat 418.380 kb on - strand, within CCNA_00400at 418.448 kb on + strand, within CCNA_00400at 418.483 kb on + strandat 418.491 kb on - strandat 418.491 kb on - strandat 418.511 kb on - strandat 418.519 kb on + strandat 418.524 kb on + strandat 418.527 kb on - strandat 418.532 kb on + strandat 418.544 kb on + strandat 418.544 kb on + strandat 418.544 kb on + strandat 418.552 kb on - strandat 418.552 kb on - strandat 418.581 kb on + strand, within CCNA_00401at 418.613 kb on + strand, within CCNA_00401at 418.613 kb on + strand, within CCNA_00401at 418.613 kb on - strand, within CCNA_00401at 418.621 kb on - strand, within CCNA_00401at 418.632 kb on + strand, within CCNA_00401at 418.646 kb on + strand, within CCNA_00401at 418.656 kb on + strand, within CCNA_00401at 418.704 kb on - strand, within CCNA_00401at 418.778 kb on - strand, within CCNA_00401at 418.791 kb on + strand, within CCNA_00401at 418.806 kb on + strand, within CCNA_00401at 418.814 kb on - strand, within CCNA_00401at 418.820 kb on + strand, within CCNA_00401at 418.828 kb on - strand, within CCNA_00401at 418.830 kb on - strand, within CCNA_00401at 418.837 kb on + strand, within CCNA_00401at 418.865 kb on + strand, within CCNA_00401at 418.873 kb on - strand, within CCNA_00401at 418.898 kb on + strand, within CCNA_00401at 418.898 kb on + strand, within CCNA_00401at 418.906 kb on - strand, within CCNA_00401at 418.909 kb on + strand, within CCNA_00401at 418.921 kb on + strand, within CCNA_00401at 418.927 kb on + strand, within CCNA_00401at 418.944 kb on - strand, within CCNA_00401at 418.955 kb on - strand, within CCNA_00401at 418.956 kb on + strand, within CCNA_00401at 418.957 kb on + strand, within CCNA_00401at 418.990 kb on + strand, within CCNA_00401at 419.003 kb on - strand, within CCNA_00401at 419.011 kb on - strand, within CCNA_00401at 419.013 kb on + strand, within CCNA_00401at 419.015 kb on + strand, within CCNA_00401at 419.015 kb on + strand, within CCNA_00401at 419.020 kb on + strand, within CCNA_00401at 419.023 kb on - strand, within CCNA_00401at 419.041 kb on - strand, within CCNA_00401at 419.043 kb on - strand, within CCNA_00401at 419.157 kb on + strand, within CCNA_00401at 419.160 kb on + strand, within CCNA_00401at 419.160 kb on + strand, within CCNA_00401at 419.207 kb on - strandat 419.219 kb on - strandat 419.221 kb on + strandat 419.278 kb on + strandat 419.313 kb on + strandat 419.313 kb on + strandat 419.326 kb on + strand, within CCNA_00402at 419.326 kb on + strand, within CCNA_00402at 419.326 kb on + strand, within CCNA_00402at 419.334 kb on - strand, within CCNA_00402at 419.368 kb on - strand, within CCNA_00402at 419.368 kb on - strand, within CCNA_00402at 419.394 kb on + strand, within CCNA_00402at 419.433 kb on - strand, within CCNA_00402at 419.433 kb on - strand, within CCNA_00402at 419.440 kb on + strand, within CCNA_00402at 419.482 kb on + strand, within CCNA_00402at 419.531 kb on + strand, within CCNA_00402at 419.573 kb on + strand, within CCNA_00402at 419.573 kb on + strand, within CCNA_00402at 419.611 kb on + strand, within CCNA_00402at 419.613 kb on + strand, within CCNA_00402at 419.663 kb on + strandat 419.670 kb on + strandat 419.671 kb on - strandat 419.680 kb on + strandat 419.680 kb on + strandat 419.680 kb on + strandat 419.680 kb on + strandat 419.688 kb on - strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.690 kb on + strandat 419.698 kb on - strandat 419.698 kb on - strandat 419.698 kb on - strandat 419.762 kb on + strandat 419.819 kb on + strandat 419.852 kb on - strand, within CCNA_00403at 419.861 kb on + strand, within CCNA_00403at 419.866 kb on + strand, within CCNA_00403at 419.869 kb on - strand, within CCNA_00403at 419.869 kb on - strand, within CCNA_00403at 419.873 kb on - strand, within CCNA_00403at 419.874 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.913 kb on + strand, within CCNA_00403at 419.966 kb on + strand, within CCNA_00403at 419.985 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.998 kb on - strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.026 kb on - strand, within CCNA_00403at 420.026 kb on - strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.074 kb on + strand, within CCNA_00403at 420.119 kb on - strand, within CCNA_00403at 420.134 kb on + strand, within CCNA_00403at 420.255 kb on - strand, within CCNA_00403at 420.261 kb on + strandat 420.266 kb on + strand, within CCNA_00403at 420.296 kb on + strand, within CCNA_00403at 420.301 kb on + strand, within CCNA_00403at 420.303 kb on - strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.317 kb on + strand, within CCNA_00403at 420.346 kb on - strand, within CCNA_00403at 420.358 kb on - strand, within CCNA_00403at 420.365 kb on - strand, within CCNA_00403at 420.380 kb on + strand, within CCNA_00403at 420.400 kb on - strand, within CCNA_00403at 420.405 kb on - strand, within CCNA_00403at 420.428 kb on + strand, within CCNA_00403at 420.442 kb on + strand, within CCNA_00403at 420.442 kb on + strand, within CCNA_00403at 420.450 kb on - strand, within CCNA_00403at 420.481 kb on + strand, within CCNA_00403at 420.481 kb on + strand, within CCNA_00403at 420.483 kb on + strand, within CCNA_00403at 420.504 kb on - strand, within CCNA_00403at 420.515 kb on + strand, within CCNA_00403at 420.516 kb on + strand, within CCNA_00403at 420.524 kb on - strand, within CCNA_00403at 420.558 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.583 kb on + strand, within CCNA_00403at 420.588 kb on + strand, within CCNA_00403at 420.588 kb on + strand, within CCNA_00403at 420.591 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.611 kb on + strandat 420.614 kb on - strandat 420.639 kb on - strandat 420.640 kb on - strandat 420.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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418,293 + CCNA_00400 0.52 +1.5
418,295 - CCNA_00400 0.53 +0.2
418,295 - CCNA_00400 0.53 +1.0
418,357 + CCNA_00400 0.67 +1.3
418,365 - CCNA_00400 0.68 -0.1
418,378 + CCNA_00400 0.71 +1.8
418,378 + +1.0
418,380 - CCNA_00400 0.72 -1.7
418,448 + CCNA_00400 0.87 +1.7
418,483 + +0.4
418,491 - -0.8
418,491 - -0.8
418,511 - +0.2
418,519 + -0.5
418,524 + -1.0
418,527 - -1.7
418,532 + +1.5
418,544 + +0.7
418,544 + -1.0
418,544 + -2.0
418,552 - -0.6
418,552 - -1.2
418,581 + CCNA_00401 0.10 -0.2
418,613 + CCNA_00401 0.15 +0.5
418,613 + CCNA_00401 0.15 -1.5
418,613 - CCNA_00401 0.15 -0.5
418,621 - CCNA_00401 0.16 -1.1
418,632 + CCNA_00401 0.17 +0.1
418,646 + CCNA_00401 0.19 +0.0
418,656 + CCNA_00401 0.20 -0.4
418,704 - CCNA_00401 0.26 -0.2
418,778 - CCNA_00401 0.36 -1.4
418,791 + CCNA_00401 0.38 -0.5
418,806 + CCNA_00401 0.40 -0.3
418,814 - CCNA_00401 0.41 +1.0
418,820 + CCNA_00401 0.41 +1.2
418,828 - CCNA_00401 0.42 +0.2
418,830 - CCNA_00401 0.43 +0.1
418,837 + CCNA_00401 0.44 -0.4
418,865 + CCNA_00401 0.47 +0.5
418,873 - CCNA_00401 0.48 -0.3
418,898 + CCNA_00401 0.51 -0.5
418,898 + CCNA_00401 0.51 -0.3
418,906 - CCNA_00401 0.53 -0.9
418,909 + CCNA_00401 0.53 -0.1
418,921 + CCNA_00401 0.54 +1.6
418,927 + CCNA_00401 0.55 -1.0
418,944 - CCNA_00401 0.57 +0.7
418,955 - CCNA_00401 0.59 -0.2
418,956 + CCNA_00401 0.59 +0.6
418,957 + CCNA_00401 0.59 -1.4
418,990 + CCNA_00401 0.63 +0.2
419,003 - CCNA_00401 0.65 -0.1
419,011 - CCNA_00401 0.66 +0.1
419,013 + CCNA_00401 0.66 -0.0
419,015 + CCNA_00401 0.67 +0.4
419,015 + CCNA_00401 0.67 -0.4
419,020 + CCNA_00401 0.67 -0.5
419,023 - CCNA_00401 0.68 +0.0
419,041 - CCNA_00401 0.70 +1.4
419,043 - CCNA_00401 0.70 -0.2
419,157 + CCNA_00401 0.85 -0.9
419,160 + CCNA_00401 0.85 -1.2
419,160 + CCNA_00401 0.85 -1.5
419,207 - -0.2
419,219 - +0.5
419,221 + +0.1
419,278 + -1.2
419,313 + +0.3
419,313 + -0.5
419,326 + CCNA_00402 0.12 +0.6
419,326 + CCNA_00402 0.12 +0.5
419,326 + CCNA_00402 0.12 -1.0
419,334 - CCNA_00402 0.14 +0.6
419,368 - CCNA_00402 0.22 -1.4
419,368 - CCNA_00402 0.22 +0.5
419,394 + CCNA_00402 0.29 -0.9
419,433 - CCNA_00402 0.38 -2.0
419,433 - CCNA_00402 0.38 +1.0
419,440 + CCNA_00402 0.40 -1.3
419,482 + CCNA_00402 0.50 -0.4
419,531 + CCNA_00402 0.61 -1.3
419,573 + CCNA_00402 0.71 +0.6
419,573 + CCNA_00402 0.71 -1.2
419,611 + CCNA_00402 0.81 -1.9
419,613 + CCNA_00402 0.81 -2.3
419,663 + -0.6
419,670 + +0.6
419,671 - -0.1
419,680 + -0.1
419,680 + +0.0
419,680 + -0.1
419,680 + +0.3
419,688 - -1.1
419,690 + -0.7
419,690 + -1.1
419,690 + -0.2
419,690 + -0.8
419,690 + -0.1
419,698 - -0.9
419,698 - -1.7
419,698 - +0.3
419,762 + -2.2
419,819 + +0.2
419,852 - CCNA_00403 0.13 +0.2
419,861 + CCNA_00403 0.14 -1.3
419,866 + CCNA_00403 0.14 +0.6
419,869 - CCNA_00403 0.15 -1.5
419,869 - CCNA_00403 0.15 +0.8
419,873 - CCNA_00403 0.15 +0.2
419,874 - CCNA_00403 0.15 -1.0
419,911 - CCNA_00403 0.19 -0.8
419,911 - CCNA_00403 0.19 -0.1
419,911 - CCNA_00403 0.19 -2.2
419,911 - CCNA_00403 0.19 -0.7
419,913 + CCNA_00403 0.19 +0.8
419,966 + CCNA_00403 0.24 +0.1
419,985 + CCNA_00403 0.26 -1.0
419,990 + CCNA_00403 0.27 -0.9
419,990 + CCNA_00403 0.27 +0.3
419,990 + CCNA_00403 0.27 -0.7
419,998 - CCNA_00403 0.28 -2.6
420,018 + CCNA_00403 0.30 +1.6
420,018 + CCNA_00403 0.30 -2.6
420,018 + CCNA_00403 0.30 -0.1
420,018 + CCNA_00403 0.30 +1.5
420,018 + CCNA_00403 0.30 +0.8
420,026 - CCNA_00403 0.31 -0.5
420,026 - CCNA_00403 0.31 +2.6
420,064 + CCNA_00403 0.35 -0.6
420,064 + CCNA_00403 0.35 -1.7
420,064 + CCNA_00403 0.35 +0.1
420,064 + CCNA_00403 0.35 -1.7
420,072 - CCNA_00403 0.35 -1.7
420,072 - CCNA_00403 0.35 +0.0
420,072 - CCNA_00403 0.35 +0.1
420,074 + CCNA_00403 0.36 +0.5
420,119 - CCNA_00403 0.40 -1.5
420,134 + CCNA_00403 0.42 -0.8
420,255 - CCNA_00403 0.54 +0.1
420,261 + +3.6
420,266 + CCNA_00403 0.55 -0.2
420,296 + CCNA_00403 0.58 -0.3
420,301 + CCNA_00403 0.59 +0.3
420,303 - CCNA_00403 0.59 -0.4
420,306 + CCNA_00403 0.59 -1.7
420,306 + CCNA_00403 0.59 -0.8
420,306 + CCNA_00403 0.59 -0.2
420,306 + CCNA_00403 0.59 +0.2
420,314 - CCNA_00403 0.60 -0.8
420,314 - CCNA_00403 0.60 -0.9
420,314 - CCNA_00403 0.60 -0.4
420,314 - CCNA_00403 0.60 -1.0
420,317 + CCNA_00403 0.61 -0.4
420,346 - CCNA_00403 0.64 -0.4
420,358 - CCNA_00403 0.65 +0.5
420,365 - CCNA_00403 0.66 +0.8
420,380 + CCNA_00403 0.67 -0.2
420,400 - CCNA_00403 0.69 -1.1
420,405 - CCNA_00403 0.70 +0.6
420,428 + CCNA_00403 0.72 +0.3
420,442 + CCNA_00403 0.73 -0.1
420,442 + CCNA_00403 0.73 -1.4
420,450 - CCNA_00403 0.74 -1.9
420,481 + CCNA_00403 0.77 -1.9
420,481 + CCNA_00403 0.77 -2.3
420,483 + CCNA_00403 0.78 -0.2
420,504 - CCNA_00403 0.80 -1.4
420,515 + CCNA_00403 0.81 -0.5
420,516 + CCNA_00403 0.81 -0.4
420,524 - CCNA_00403 0.82 +0.8
420,558 + CCNA_00403 0.85 -0.2
420,563 + CCNA_00403 0.86 -1.7
420,563 + CCNA_00403 0.86 -0.0
420,563 + CCNA_00403 0.86 -0.8
420,563 + CCNA_00403 0.86 -0.1
420,563 + CCNA_00403 0.86 +0.6
420,571 - CCNA_00403 0.87 -0.7
420,571 - CCNA_00403 0.87 +1.3
420,571 - CCNA_00403 0.87 +0.3
420,571 - CCNA_00403 0.87 -0.3
420,571 - CCNA_00403 0.87 -0.2
420,583 + CCNA_00403 0.88 -0.9
420,588 + CCNA_00403 0.88 +1.6
420,588 + CCNA_00403 0.88 -0.3
420,591 - CCNA_00403 0.89 -1.2
420,596 - CCNA_00403 0.89 -1.2
420,596 - CCNA_00403 0.89 -0.3
420,596 - CCNA_00403 0.89 -0.5
420,596 - CCNA_00403 0.89 -1.7
420,596 - CCNA_00403 0.89 -2.1
420,611 + -1.2
420,614 - +0.3
420,639 - -0.5
420,640 - +2.4
420,665 - +0.1

Or see this region's nucleotide sequence