Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00344

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00343 and CCNA_00344 are separated by 59 nucleotidesCCNA_00344 and CCNA_00345 are separated by 7 nucleotides CCNA_00343: CCNA_00343 - dihydrolipoamide succinyltransferase, at 357,720 to 358,928 _00343 CCNA_00344: CCNA_00344 - hypothetical protein, at 358,988 to 359,335 _00344 CCNA_00345: CCNA_00345 - alpha/beta family hydrolase, at 359,343 to 360,176 _00345 Position (kb) 358 359 360Strain fitness (log2 ratio) -2 -1 0 1 2at 358.933 kb on + strandat 358.980 kb on + strandat 358.988 kb on - strandat 358.990 kb on + strandat 358.990 kb on + strandat 358.990 kb on + strandat 358.990 kb on + strandat 358.990 kb on + strandat 358.990 kb on + strandat 358.997 kb on + strandat 358.998 kb on - strandat 358.998 kb on - strandat 358.998 kb on - strandat 358.998 kb on - strandat 358.998 kb on - strandat 359.001 kb on + strandat 359.015 kb on - strandat 359.042 kb on + strand, within CCNA_00344at 359.049 kb on - strand, within CCNA_00344at 359.050 kb on - strand, within CCNA_00344at 359.050 kb on - strand, within CCNA_00344at 359.050 kb on - strand, within CCNA_00344at 359.050 kb on - strand, within CCNA_00344at 359.099 kb on - strand, within CCNA_00344at 359.127 kb on - strand, within CCNA_00344at 359.133 kb on + strand, within CCNA_00344at 359.163 kb on - strand, within CCNA_00344at 359.167 kb on + strand, within CCNA_00344at 359.175 kb on - strand, within CCNA_00344at 359.175 kb on - strand, within CCNA_00344at 359.192 kb on + strand, within CCNA_00344at 359.205 kb on - strand, within CCNA_00344at 359.277 kb on - strand, within CCNA_00344at 359.324 kb on + strandat 359.330 kb on + strandat 359.361 kb on + strandat 359.388 kb on - strandat 359.407 kb on + strandat 359.407 kb on + strandat 359.415 kb on - strandat 359.434 kb on + strand, within CCNA_00345at 359.445 kb on + strand, within CCNA_00345at 359.475 kb on - strand, within CCNA_00345at 359.487 kb on - strand, within CCNA_00345at 359.497 kb on + strand, within CCNA_00345at 359.499 kb on + strand, within CCNA_00345at 359.505 kb on - strand, within CCNA_00345at 359.507 kb on - strand, within CCNA_00345at 359.530 kb on + strand, within CCNA_00345at 359.538 kb on - strand, within CCNA_00345at 359.542 kb on - strand, within CCNA_00345at 359.558 kb on - strand, within CCNA_00345at 359.608 kb on + strand, within CCNA_00345at 359.612 kb on + strandat 359.618 kb on + strand, within CCNA_00345at 359.618 kb on + strand, within CCNA_00345at 359.626 kb on - strand, within CCNA_00345at 359.689 kb on - strand, within CCNA_00345at 359.697 kb on + strand, within CCNA_00345at 359.718 kb on + strand, within CCNA_00345at 359.741 kb on - strand, within CCNA_00345at 359.752 kb on + strand, within CCNA_00345at 359.754 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.796 kb on + strand, within CCNA_00345at 359.801 kb on + strand, within CCNA_00345at 359.804 kb on - strand, within CCNA_00345at 359.820 kb on + strand, within CCNA_00345at 359.827 kb on - strand, within CCNA_00345at 359.833 kb on + strand, within CCNA_00345at 359.833 kb on + strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.844 kb on + strand, within CCNA_00345at 359.877 kb on - strand, within CCNA_00345at 359.901 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.922 kb on - strand, within CCNA_00345at 359.981 kb on + strandat 359.981 kb on + strand, within CCNA_00345at 359.984 kb on - strand, within CCNA_00345at 359.984 kb on - strand, within CCNA_00345at 359.991 kb on + strand, within CCNA_00345at 359.999 kb on - strand, within CCNA_00345at 359.999 kb on - strand, within CCNA_00345at 359.999 kb on - strand, within CCNA_00345at 360.037 kb on + strand, within CCNA_00345at 360.063 kb on + strand, within CCNA_00345at 360.063 kb on - strand, within CCNA_00345at 360.063 kb on - strand, within CCNA_00345at 360.071 kb on - strand, within CCNA_00345at 360.123 kb on - strandat 360.148 kb on + strandat 360.161 kb on - strandat 360.161 kb on - strandat 360.161 kb on - strandat 360.161 kb on - strandat 360.166 kb on + strandat 360.166 kb on - strandat 360.178 kb on + strandat 360.178 kb on + strandat 360.185 kb on + strandat 360.198 kb on - strandat 360.206 kb on - strandat 360.207 kb on + strandat 360.207 kb on + strandat 360.215 kb on - strandat 360.226 kb on + strandat 360.231 kb on + strandat 360.239 kb on - strandat 360.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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358,933 + +2.4
358,980 + +0.5
358,988 - +1.0
358,990 + +0.3
358,990 + +1.0
358,990 + +2.3
358,990 + +2.3
358,990 + +0.3
358,990 + +0.7
358,997 + +2.2
358,998 - +1.7
358,998 - -1.5
358,998 - -0.6
358,998 - +0.3
358,998 - -0.0
359,001 + +0.8
359,015 - +0.8
359,042 + CCNA_00344 0.16 +1.1
359,049 - CCNA_00344 0.18 +0.6
359,050 - CCNA_00344 0.18 -0.9
359,050 - CCNA_00344 0.18 -1.2
359,050 - CCNA_00344 0.18 -0.4
359,050 - CCNA_00344 0.18 +0.1
359,099 - CCNA_00344 0.32 +2.1
359,127 - CCNA_00344 0.40 +0.8
359,133 + CCNA_00344 0.42 +0.4
359,163 - CCNA_00344 0.50 -1.0
359,167 + CCNA_00344 0.51 +0.5
359,175 - CCNA_00344 0.54 +2.3
359,175 - CCNA_00344 0.54 +0.3
359,192 + CCNA_00344 0.59 +0.2
359,205 - CCNA_00344 0.62 +1.0
359,277 - CCNA_00344 0.83 +1.0
359,324 + +1.2
359,330 + +1.3
359,361 + +0.8
359,388 - +0.2
359,407 + +0.6
359,407 + +0.4
359,415 - -0.9
359,434 + CCNA_00345 0.11 -0.6
359,445 + CCNA_00345 0.12 +0.7
359,475 - CCNA_00345 0.16 -1.0
359,487 - CCNA_00345 0.17 +0.4
359,497 + CCNA_00345 0.18 +0.6
359,499 + CCNA_00345 0.19 -0.5
359,505 - CCNA_00345 0.19 +0.4
359,507 - CCNA_00345 0.20 +0.6
359,530 + CCNA_00345 0.22 -0.2
359,538 - CCNA_00345 0.23 +0.9
359,542 - CCNA_00345 0.24 -1.5
359,558 - CCNA_00345 0.26 -0.8
359,608 + CCNA_00345 0.32 -0.2
359,612 + +1.1
359,618 + CCNA_00345 0.33 -0.7
359,618 + CCNA_00345 0.33 +0.3
359,626 - CCNA_00345 0.34 +0.1
359,689 - CCNA_00345 0.41 +0.2
359,697 + CCNA_00345 0.42 -2.2
359,718 + CCNA_00345 0.45 -0.5
359,741 - CCNA_00345 0.48 +1.2
359,752 + CCNA_00345 0.49 +0.1
359,754 - CCNA_00345 0.49 -0.9
359,760 - CCNA_00345 0.50 -0.1
359,760 - CCNA_00345 0.50 -1.4
359,760 - CCNA_00345 0.50 -0.9
359,760 - CCNA_00345 0.50 -0.2
359,796 + CCNA_00345 0.54 -0.1
359,801 + CCNA_00345 0.55 -0.7
359,804 - CCNA_00345 0.55 +0.7
359,820 + CCNA_00345 0.57 -0.1
359,827 - CCNA_00345 0.58 -0.5
359,833 + CCNA_00345 0.59 -0.7
359,833 + CCNA_00345 0.59 +1.1
359,841 - CCNA_00345 0.60 +0.7
359,841 - CCNA_00345 0.60 -0.2
359,841 - CCNA_00345 0.60 -0.5
359,841 - CCNA_00345 0.60 +1.5
359,841 - CCNA_00345 0.60 +0.2
359,844 + CCNA_00345 0.60 -2.1
359,877 - CCNA_00345 0.64 +0.4
359,901 + CCNA_00345 0.67 -0.2
359,902 + CCNA_00345 0.67 -1.9
359,902 + CCNA_00345 0.67 +0.6
359,902 + CCNA_00345 0.67 +0.9
359,902 + CCNA_00345 0.67 -1.9
359,902 + CCNA_00345 0.67 -2.4
359,902 + CCNA_00345 0.67 -1.6
359,902 + CCNA_00345 0.67 +0.9
359,902 + CCNA_00345 0.67 -1.3
359,902 + CCNA_00345 0.67 +1.7
359,902 + CCNA_00345 0.67 -0.4
359,902 + CCNA_00345 0.67 -0.3
359,910 - CCNA_00345 0.68 -0.2
359,910 - CCNA_00345 0.68 -0.5
359,910 - CCNA_00345 0.68 -1.2
359,910 - CCNA_00345 0.68 -1.1
359,910 - CCNA_00345 0.68 +0.3
359,910 - CCNA_00345 0.68 +0.1
359,910 - CCNA_00345 0.68 +0.9
359,910 - CCNA_00345 0.68 -1.7
359,910 - CCNA_00345 0.68 +0.2
359,910 - CCNA_00345 0.68 +0.5
359,910 - CCNA_00345 0.68 -0.9
359,910 - CCNA_00345 0.68 -1.4
359,922 - CCNA_00345 0.69 -0.9
359,981 + +2.7
359,981 + CCNA_00345 0.76 +0.2
359,984 - CCNA_00345 0.77 -1.4
359,984 - CCNA_00345 0.77 -0.0
359,991 + CCNA_00345 0.78 -0.7
359,999 - CCNA_00345 0.79 +0.3
359,999 - CCNA_00345 0.79 -0.3
359,999 - CCNA_00345 0.79 -0.9
360,037 + CCNA_00345 0.83 -2.1
360,063 + CCNA_00345 0.86 +0.2
360,063 - CCNA_00345 0.86 +1.0
360,063 - CCNA_00345 0.86 -0.8
360,071 - CCNA_00345 0.87 -0.2
360,123 - -0.4
360,148 + +0.1
360,161 - -0.4
360,161 - -0.7
360,161 - -1.4
360,161 - -0.3
360,166 + -0.2
360,166 - -0.2
360,178 + -2.0
360,178 + -0.6
360,185 + +0.2
360,198 - +1.1
360,206 - -0.7
360,207 + -2.7
360,207 + +0.9
360,215 - -1.3
360,226 + -1.4
360,231 + -0.6
360,239 - -1.6
360,255 - -0.4

Or see this region's nucleotide sequence