Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00217

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00215 and CCNA_00216 are separated by 67 nucleotidesCCNA_00216 and CCNA_00217 are separated by 114 nucleotidesCCNA_00217 and CCNA_00218 are separated by 3 nucleotidesCCNA_00218 and CCNA_00220 are separated by 152 nucleotides CCNA_00215: CCNA_00215 - SapC surface layer protein, at 232,614 to 233,402 _00215 CCNA_00216: CCNA_00216 - hot dog superfamily protein, at 233,470 to 233,862 _00216 CCNA_00217: CCNA_00217 - thiol:disulfide interchange protein DsbD, at 233,977 to 236,127 _00217 CCNA_00218: CCNA_00218 - hypothetical protein, at 236,131 to 236,877 _00218 CCNA_00220: CCNA_00220 - thiol-disulfide isomerase and thioredoxin, at 237,030 to 237,635 _00220 Position (kb) 233 234 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.030 kb on + strand, within CCNA_00215at 233.036 kb on + strand, within CCNA_00215at 233.069 kb on - strand, within CCNA_00215at 233.090 kb on + strand, within CCNA_00215at 233.133 kb on + strand, within CCNA_00215at 233.140 kb on + strand, within CCNA_00215at 233.158 kb on - strand, within CCNA_00215at 233.159 kb on + strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.178 kb on - strand, within CCNA_00215at 233.178 kb on - strand, within CCNA_00215at 233.228 kb on + strand, within CCNA_00215at 233.236 kb on - strand, within CCNA_00215at 233.260 kb on + strand, within CCNA_00215at 233.307 kb on + strand, within CCNA_00215at 233.307 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.314 kb on - strand, within CCNA_00215at 233.357 kb on - strandat 233.378 kb on + strandat 233.386 kb on - strandat 233.386 kb on - strandat 233.427 kb on - strandat 233.436 kb on + strandat 233.555 kb on + strand, within CCNA_00216at 233.555 kb on + strand, within CCNA_00216at 233.556 kb on - strand, within CCNA_00216at 233.557 kb on - strand, within CCNA_00216at 233.562 kb on - strand, within CCNA_00216at 233.563 kb on - strand, within CCNA_00216at 233.563 kb on - strand, within CCNA_00216at 233.563 kb on - strand, within CCNA_00216at 233.573 kb on - strand, within CCNA_00216at 233.610 kb on - strand, within CCNA_00216at 233.712 kb on - strand, within CCNA_00216at 233.779 kb on + strand, within CCNA_00216at 233.780 kb on - strand, within CCNA_00216at 233.807 kb on + strand, within CCNA_00216at 233.898 kb on + strandat 233.911 kb on - strandat 233.915 kb on + strandat 233.944 kb on - strandat 233.949 kb on - strandat 233.963 kb on + strandat 233.993 kb on - strandat 234.010 kb on + strandat 234.026 kb on - strandat 235.644 kb on + strand, within CCNA_00217at 235.658 kb on - strand, within CCNA_00217at 235.688 kb on - strand, within CCNA_00217at 236.175 kb on + strandat 236.175 kb on + strandat 236.186 kb on + strandat 236.228 kb on + strand, within CCNA_00218at 236.236 kb on - strand, within CCNA_00218at 236.255 kb on + strand, within CCNA_00218at 236.259 kb on + strand, within CCNA_00218at 236.263 kb on - strand, within CCNA_00218at 236.267 kb on + strand, within CCNA_00218at 236.277 kb on + strand, within CCNA_00218at 236.284 kb on + strand, within CCNA_00218at 236.301 kb on - strand, within CCNA_00218at 236.339 kb on + strand, within CCNA_00218at 236.345 kb on - strand, within CCNA_00218at 236.386 kb on + strand, within CCNA_00218at 236.386 kb on + strand, within CCNA_00218at 236.386 kb on + strand, within CCNA_00218at 236.387 kb on + strand, within CCNA_00218at 236.394 kb on - strand, within CCNA_00218at 236.394 kb on - strand, within CCNA_00218at 236.394 kb on - strand, within CCNA_00218at 236.394 kb on - strand, within CCNA_00218at 236.395 kb on - strand, within CCNA_00218at 236.412 kb on - strand, within CCNA_00218at 236.429 kb on + strand, within CCNA_00218at 236.429 kb on + strand, within CCNA_00218at 236.429 kb on + strand, within CCNA_00218at 236.437 kb on - strand, within CCNA_00218at 236.437 kb on - strand, within CCNA_00218at 236.445 kb on + strand, within CCNA_00218at 236.453 kb on + strand, within CCNA_00218at 236.453 kb on + strand, within CCNA_00218at 236.479 kb on + strand, within CCNA_00218at 236.479 kb on + strand, within CCNA_00218at 236.487 kb on - strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.527 kb on - strand, within CCNA_00218at 236.563 kb on - strand, within CCNA_00218at 236.586 kb on - strand, within CCNA_00218at 236.591 kb on - strand, within CCNA_00218at 236.608 kb on + strand, within CCNA_00218at 236.671 kb on - strand, within CCNA_00218at 236.689 kb on - strand, within CCNA_00218at 236.689 kb on - strand, within CCNA_00218at 236.691 kb on + strand, within CCNA_00218at 236.691 kb on + strand, within CCNA_00218at 236.699 kb on - strand, within CCNA_00218at 236.702 kb on + strand, within CCNA_00218at 236.702 kb on + strand, within CCNA_00218at 236.710 kb on - strand, within CCNA_00218at 236.752 kb on - strand, within CCNA_00218at 236.786 kb on + strand, within CCNA_00218at 236.791 kb on + strand, within CCNA_00218at 236.799 kb on - strand, within CCNA_00218at 236.810 kb on + strandat 236.810 kb on + strandat 236.815 kb on + strandat 236.817 kb on + strandat 236.820 kb on - strandat 236.825 kb on - strandat 236.830 kb on + strandat 236.917 kb on + strandat 236.946 kb on + strandat 236.954 kb on - strandat 237.060 kb on + strandat 237.093 kb on + strand, within CCNA_00220

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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233,015 + CCNA_00215 0.51 +1.1
233,015 + CCNA_00215 0.51 +1.2
233,015 + CCNA_00215 0.51 +1.9
233,015 + CCNA_00215 0.51 +2.0
233,023 - CCNA_00215 0.52 -0.9
233,023 - CCNA_00215 0.52 -0.5
233,023 - CCNA_00215 0.52 +0.4
233,030 + CCNA_00215 0.53 +1.5
233,036 + CCNA_00215 0.53 +1.6
233,069 - CCNA_00215 0.58 +1.0
233,090 + CCNA_00215 0.60 +1.4
233,133 + CCNA_00215 0.66 +2.0
233,140 + CCNA_00215 0.67 +1.9
233,158 - CCNA_00215 0.69 -2.2
233,159 + CCNA_00215 0.69 +2.2
233,170 + CCNA_00215 0.70 +1.9
233,170 + CCNA_00215 0.70 +2.3
233,170 + CCNA_00215 0.70 +1.7
233,178 - CCNA_00215 0.71 +0.2
233,178 - CCNA_00215 0.71 -1.3
233,228 + CCNA_00215 0.78 +2.2
233,236 - CCNA_00215 0.79 -0.6
233,260 + CCNA_00215 0.82 +0.4
233,307 + CCNA_00215 0.88 +2.2
233,307 + CCNA_00215 0.88 +2.5
233,312 + CCNA_00215 0.88 +2.5
233,312 + CCNA_00215 0.88 +1.9
233,312 + CCNA_00215 0.88 +2.5
233,314 - CCNA_00215 0.89 -1.3
233,357 - -0.9
233,378 + +1.9
233,386 - +0.5
233,386 - +0.2
233,427 - -1.6
233,436 + +1.2
233,555 + CCNA_00216 0.22 -0.2
233,555 + CCNA_00216 0.22 -1.7
233,556 - CCNA_00216 0.22 +0.4
233,557 - CCNA_00216 0.22 -0.5
233,562 - CCNA_00216 0.23 -0.3
233,563 - CCNA_00216 0.24 +0.6
233,563 - CCNA_00216 0.24 +0.6
233,563 - CCNA_00216 0.24 -1.0
233,573 - CCNA_00216 0.26 -0.2
233,610 - CCNA_00216 0.36 -1.1
233,712 - CCNA_00216 0.62 +0.2
233,779 + CCNA_00216 0.79 -2.1
233,780 - CCNA_00216 0.79 +1.8
233,807 + CCNA_00216 0.86 -1.2
233,898 + -2.8
233,911 - -2.3
233,915 + +0.7
233,944 - -0.4
233,949 - -0.6
233,963 + -0.5
233,993 - -1.5
234,010 + -0.9
234,026 - -0.8
235,644 + CCNA_00217 0.77 -0.2
235,658 - CCNA_00217 0.78 +0.7
235,688 - CCNA_00217 0.80 -1.5
236,175 + +1.8
236,175 + +2.9
236,186 + -2.1
236,228 + CCNA_00218 0.13 -0.0
236,236 - CCNA_00218 0.14 +2.0
236,255 + CCNA_00218 0.17 -0.3
236,259 + CCNA_00218 0.17 -2.4
236,263 - CCNA_00218 0.18 +0.9
236,267 + CCNA_00218 0.18 +0.1
236,277 + CCNA_00218 0.20 -1.6
236,284 + CCNA_00218 0.20 +0.1
236,301 - CCNA_00218 0.23 +0.4
236,339 + CCNA_00218 0.28 -0.8
236,345 - CCNA_00218 0.29 +0.4
236,386 + CCNA_00218 0.34 -0.1
236,386 + CCNA_00218 0.34 +0.3
236,386 + CCNA_00218 0.34 +0.9
236,387 + CCNA_00218 0.34 +0.1
236,394 - CCNA_00218 0.35 -0.1
236,394 - CCNA_00218 0.35 +0.4
236,394 - CCNA_00218 0.35 -0.2
236,394 - CCNA_00218 0.35 +0.3
236,395 - CCNA_00218 0.35 +0.8
236,412 - CCNA_00218 0.38 +0.1
236,429 + CCNA_00218 0.40 -1.0
236,429 + CCNA_00218 0.40 +1.0
236,429 + CCNA_00218 0.40 -0.7
236,437 - CCNA_00218 0.41 -0.0
236,437 - CCNA_00218 0.41 +0.2
236,445 + CCNA_00218 0.42 -0.5
236,453 + CCNA_00218 0.43 +0.6
236,453 + CCNA_00218 0.43 -1.5
236,479 + CCNA_00218 0.47 +0.2
236,479 + CCNA_00218 0.47 +1.7
236,487 - CCNA_00218 0.48 -0.4
236,519 + CCNA_00218 0.52 -0.4
236,519 + CCNA_00218 0.52 -1.5
236,519 + CCNA_00218 0.52 -1.7
236,519 + CCNA_00218 0.52 -1.0
236,519 + CCNA_00218 0.52 -1.0
236,527 - CCNA_00218 0.53 -0.4
236,563 - CCNA_00218 0.58 +0.1
236,586 - CCNA_00218 0.61 +1.2
236,591 - CCNA_00218 0.62 +0.7
236,608 + CCNA_00218 0.64 -0.8
236,671 - CCNA_00218 0.72 -1.1
236,689 - CCNA_00218 0.75 +1.1
236,689 - CCNA_00218 0.75 +0.5
236,691 + CCNA_00218 0.75 -1.0
236,691 + CCNA_00218 0.75 +0.5
236,699 - CCNA_00218 0.76 +1.2
236,702 + CCNA_00218 0.76 -0.6
236,702 + CCNA_00218 0.76 -0.7
236,710 - CCNA_00218 0.78 -0.2
236,752 - CCNA_00218 0.83 -0.1
236,786 + CCNA_00218 0.88 +1.9
236,791 + CCNA_00218 0.88 +0.8
236,799 - CCNA_00218 0.89 +1.3
236,810 + -2.2
236,810 + -1.7
236,815 + +0.7
236,817 + -0.4
236,820 - +0.5
236,825 - -1.8
236,830 + +1.7
236,917 + -1.1
236,946 + +0.9
236,954 - -0.7
237,060 + -0.9
237,093 + CCNA_00220 0.10 -1.0

Or see this region's nucleotide sequence