Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00169

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00168 and CCNA_00169 are separated by 577 nucleotidesCCNA_00169 and CCNA_00170 are separated by 79 nucleotides CCNA_00168: CCNA_00168 - polysaccharide export protein, at 180,205 to 180,801 _00168 CCNA_00169: CCNA_00169 - hypothetical protein, at 181,379 to 182,917 _00169 CCNA_00170: CCNA_00170 - TonB-dependent receptor, at 182,997 to 185,663 _00170 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.391 kb on + strand, within CCNA_00168at 180.428 kb on + strand, within CCNA_00168at 180.428 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.500 kb on - strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.510 kb on + strand, within CCNA_00168at 180.513 kb on - strand, within CCNA_00168at 180.516 kb on + strand, within CCNA_00168at 180.518 kb on - strand, within CCNA_00168at 180.576 kb on + strand, within CCNA_00168at 180.595 kb on + strand, within CCNA_00168at 180.603 kb on + strand, within CCNA_00168at 180.603 kb on + strand, within CCNA_00168at 180.616 kb on + strand, within CCNA_00168at 180.636 kb on - strand, within CCNA_00168at 180.637 kb on + strand, within CCNA_00168at 180.645 kb on - strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.745 kb on + strandat 180.779 kb on + strandat 180.795 kb on + strandat 180.881 kb on + strandat 180.887 kb on + strandat 180.887 kb on + strandat 180.887 kb on + strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.919 kb on + strandat 180.940 kb on - strandat 180.961 kb on - strandat 181.274 kb on - strandat 181.315 kb on + strandat 181.363 kb on + strandat 181.377 kb on + strandat 181.384 kb on - strandat 181.385 kb on - strandat 181.392 kb on - strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.499 kb on + strandat 181.508 kb on + strandat 181.547 kb on + strand, within CCNA_00169at 181.555 kb on - strand, within CCNA_00169at 181.590 kb on - strand, within CCNA_00169at 181.590 kb on - strand, within CCNA_00169at 181.615 kb on - strand, within CCNA_00169at 181.635 kb on - strand, within CCNA_00169at 181.654 kb on - strand, within CCNA_00169at 181.669 kb on + strand, within CCNA_00169at 181.669 kb on + strand, within CCNA_00169at 181.698 kb on - strand, within CCNA_00169at 181.730 kb on + strand, within CCNA_00169at 181.732 kb on - strand, within CCNA_00169at 181.735 kb on + strand, within CCNA_00169at 181.735 kb on + strand, within CCNA_00169at 181.738 kb on - strand, within CCNA_00169at 181.748 kb on + strand, within CCNA_00169at 181.771 kb on - strand, within CCNA_00169at 181.790 kb on + strand, within CCNA_00169at 181.798 kb on - strand, within CCNA_00169at 181.808 kb on - strand, within CCNA_00169at 181.840 kb on + strand, within CCNA_00169at 181.840 kb on + strand, within CCNA_00169at 181.896 kb on + strand, within CCNA_00169at 181.901 kb on + strand, within CCNA_00169at 181.901 kb on + strand, within CCNA_00169at 181.909 kb on - strand, within CCNA_00169at 181.909 kb on - strand, within CCNA_00169at 181.909 kb on - strand, within CCNA_00169at 181.909 kb on - strand, within CCNA_00169at 181.919 kb on + strand, within CCNA_00169at 181.963 kb on + strand, within CCNA_00169at 181.974 kb on + strand, within CCNA_00169at 182.014 kb on + strand, within CCNA_00169at 182.014 kb on + strand, within CCNA_00169at 182.031 kb on + strand, within CCNA_00169at 182.039 kb on - strand, within CCNA_00169at 182.041 kb on + strand, within CCNA_00169at 182.047 kb on - strand, within CCNA_00169at 182.057 kb on - strand, within CCNA_00169at 182.060 kb on + strand, within CCNA_00169at 182.068 kb on - strand, within CCNA_00169at 182.083 kb on + strand, within CCNA_00169at 182.092 kb on + strand, within CCNA_00169at 182.161 kb on - strand, within CCNA_00169at 182.166 kb on + strand, within CCNA_00169at 182.166 kb on + strand, within CCNA_00169at 182.176 kb on + strandat 182.179 kb on - strand, within CCNA_00169at 182.182 kb on + strand, within CCNA_00169at 182.189 kb on + strand, within CCNA_00169at 182.189 kb on + strand, within CCNA_00169at 182.191 kb on - strand, within CCNA_00169at 182.197 kb on - strand, within CCNA_00169at 182.197 kb on - strand, within CCNA_00169at 182.211 kb on + strand, within CCNA_00169at 182.267 kb on + strand, within CCNA_00169at 182.267 kb on + strand, within CCNA_00169at 182.275 kb on - strand, within CCNA_00169at 182.277 kb on + strand, within CCNA_00169at 182.310 kb on - strand, within CCNA_00169at 182.317 kb on - strand, within CCNA_00169at 182.326 kb on - strand, within CCNA_00169at 182.403 kb on - strand, within CCNA_00169at 182.419 kb on + strand, within CCNA_00169at 182.433 kb on + strand, within CCNA_00169at 182.438 kb on + strand, within CCNA_00169at 182.440 kb on + strand, within CCNA_00169at 182.478 kb on - strand, within CCNA_00169at 182.525 kb on - strand, within CCNA_00169at 182.538 kb on + strand, within CCNA_00169at 182.538 kb on + strand, within CCNA_00169at 182.563 kb on + strand, within CCNA_00169at 182.597 kb on + strand, within CCNA_00169at 182.597 kb on + strand, within CCNA_00169at 182.608 kb on - strand, within CCNA_00169at 182.629 kb on + strand, within CCNA_00169at 182.630 kb on + strand, within CCNA_00169at 182.758 kb on + strand, within CCNA_00169at 182.766 kb on + strandat 182.766 kb on - strandat 182.771 kb on + strandat 182.771 kb on + strandat 182.779 kb on - strandat 182.779 kb on - strandat 182.779 kb on - strandat 182.811 kb on - strandat 182.811 kb on - strandat 182.843 kb on + strandat 182.857 kb on - strandat 182.881 kb on + strandat 182.881 kb on + strandat 182.920 kb on - strandat 182.949 kb on + strandat 182.952 kb on + strandat 183.016 kb on + strandat 183.018 kb on - strandat 183.128 kb on + strandat 183.136 kb on - strandat 183.232 kb on + strandat 183.239 kb on + strandat 183.244 kb on + strandat 183.272 kb on + strand, within CCNA_00170at 183.280 kb on - strand, within CCNA_00170at 183.296 kb on - strand, within CCNA_00170at 183.297 kb on - strand, within CCNA_00170at 183.339 kb on - strand, within CCNA_00170at 183.339 kb on - strand, within CCNA_00170at 183.374 kb on + strand, within CCNA_00170at 183.382 kb on - strand, within CCNA_00170at 183.382 kb on - strand, within CCNA_00170at 183.382 kb on - strand, within CCNA_00170at 183.397 kb on + strand, within CCNA_00170at 183.397 kb on + strand, within CCNA_00170at 183.397 kb on + strand, within CCNA_00170at 183.397 kb on + strand, within CCNA_00170at 183.405 kb on - strand, within CCNA_00170at 183.405 kb on - strand, within CCNA_00170at 183.405 kb on - strand, within CCNA_00170at 183.405 kb on - strand, within CCNA_00170at 183.431 kb on - strand, within CCNA_00170at 183.592 kb on - strand, within CCNA_00170at 183.606 kb on + strand, within CCNA_00170at 183.608 kb on - strand, within CCNA_00170at 183.653 kb on + strand, within CCNA_00170at 183.702 kb on + strand, within CCNA_00170at 183.707 kb on + strand, within CCNA_00170at 183.707 kb on + strand, within CCNA_00170at 183.707 kb on + strand, within CCNA_00170at 183.710 kb on - strand, within CCNA_00170at 183.712 kb on + strand, within CCNA_00170at 183.715 kb on - strand, within CCNA_00170at 183.720 kb on - strand, within CCNA_00170at 183.720 kb on - strand, within CCNA_00170at 183.730 kb on - strand, within CCNA_00170at 183.750 kb on + strandat 183.758 kb on - strand, within CCNA_00170at 183.782 kb on - strandat 183.815 kb on + strand, within CCNA_00170at 183.846 kb on - strand, within CCNA_00170at 183.887 kb on + strand, within CCNA_00170at 183.898 kb on + strand, within CCNA_00170at 183.907 kb on + strand, within CCNA_00170at 183.911 kb on + strand, within CCNA_00170

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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180,391 + CCNA_00168 0.31 +0.6
180,428 + CCNA_00168 0.37 +0.7
180,428 + CCNA_00168 0.37 +1.2
180,433 + CCNA_00168 0.38 +1.1
180,433 + CCNA_00168 0.38 +0.7
180,462 + CCNA_00168 0.43 +0.1
180,462 + CCNA_00168 0.43 +1.0
180,462 + CCNA_00168 0.43 +0.8
180,492 + CCNA_00168 0.48 +0.6
180,492 + CCNA_00168 0.48 +1.7
180,492 + CCNA_00168 0.48 +0.9
180,500 - CCNA_00168 0.49 -0.9
180,505 + CCNA_00168 0.50 +0.1
180,505 + CCNA_00168 0.50 +0.8
180,505 + CCNA_00168 0.50 +1.2
180,510 + CCNA_00168 0.51 +0.5
180,513 - CCNA_00168 0.52 -0.2
180,516 + CCNA_00168 0.52 +0.5
180,518 - CCNA_00168 0.52 +1.1
180,576 + CCNA_00168 0.62 +0.6
180,595 + CCNA_00168 0.65 +0.6
180,603 + CCNA_00168 0.67 +1.0
180,603 + CCNA_00168 0.67 +0.3
180,616 + CCNA_00168 0.69 +0.9
180,636 - CCNA_00168 0.72 -0.7
180,637 + CCNA_00168 0.72 +0.3
180,645 - CCNA_00168 0.74 +1.1
180,726 + CCNA_00168 0.87 +1.3
180,726 + CCNA_00168 0.87 +0.9
180,726 + CCNA_00168 0.87 +1.2
180,734 - CCNA_00168 0.89 -1.1
180,734 - CCNA_00168 0.89 -0.1
180,745 + +1.8
180,779 + +1.6
180,795 + +1.7
180,881 + -1.6
180,887 + -0.7
180,887 + +0.7
180,887 + -0.2
180,895 - -0.1
180,895 - +0.2
180,919 + +1.1
180,940 - -0.4
180,961 - -2.1
181,274 - -2.6
181,315 + -0.6
181,363 + -2.2
181,377 + -1.6
181,384 - +0.0
181,385 - +2.1
181,392 - +0.7
181,403 + -2.3
181,403 + -1.4
181,403 + -0.4
181,403 + +0.2
181,403 + +1.3
181,499 + -2.0
181,508 + -2.4
181,547 + CCNA_00169 0.11 -1.3
181,555 - CCNA_00169 0.11 -0.2
181,590 - CCNA_00169 0.14 +0.4
181,590 - CCNA_00169 0.14 +0.6
181,615 - CCNA_00169 0.15 -2.2
181,635 - CCNA_00169 0.17 -2.0
181,654 - CCNA_00169 0.18 +0.0
181,669 + CCNA_00169 0.19 -0.1
181,669 + CCNA_00169 0.19 -1.3
181,698 - CCNA_00169 0.21 -1.8
181,730 + CCNA_00169 0.23 +0.2
181,732 - CCNA_00169 0.23 -0.0
181,735 + CCNA_00169 0.23 +0.6
181,735 + CCNA_00169 0.23 -0.4
181,738 - CCNA_00169 0.23 -0.4
181,748 + CCNA_00169 0.24 -0.8
181,771 - CCNA_00169 0.25 -0.9
181,790 + CCNA_00169 0.27 -0.3
181,798 - CCNA_00169 0.27 -0.7
181,808 - CCNA_00169 0.28 +1.1
181,840 + CCNA_00169 0.30 -1.1
181,840 + CCNA_00169 0.30 -0.7
181,896 + CCNA_00169 0.34 -0.4
181,901 + CCNA_00169 0.34 -2.1
181,901 + CCNA_00169 0.34 -1.0
181,909 - CCNA_00169 0.34 -1.1
181,909 - CCNA_00169 0.34 -0.8
181,909 - CCNA_00169 0.34 +0.3
181,909 - CCNA_00169 0.34 -0.4
181,919 + CCNA_00169 0.35 -0.4
181,963 + CCNA_00169 0.38 +1.7
181,974 + CCNA_00169 0.39 +1.3
182,014 + CCNA_00169 0.41 +0.9
182,014 + CCNA_00169 0.41 -1.3
182,031 + CCNA_00169 0.42 +0.0
182,039 - CCNA_00169 0.43 -1.4
182,041 + CCNA_00169 0.43 +1.6
182,047 - CCNA_00169 0.43 -0.9
182,057 - CCNA_00169 0.44 +0.0
182,060 + CCNA_00169 0.44 -1.6
182,068 - CCNA_00169 0.45 -1.1
182,083 + CCNA_00169 0.46 -2.9
182,092 + CCNA_00169 0.46 -0.8
182,161 - CCNA_00169 0.51 -0.7
182,166 + CCNA_00169 0.51 -0.6
182,166 + CCNA_00169 0.51 -1.4
182,176 + +2.1
182,179 - CCNA_00169 0.52 +2.1
182,182 + CCNA_00169 0.52 -3.2
182,189 + CCNA_00169 0.53 +0.6
182,189 + CCNA_00169 0.53 +0.6
182,191 - CCNA_00169 0.53 +1.1
182,197 - CCNA_00169 0.53 -0.7
182,197 - CCNA_00169 0.53 -0.5
182,211 + CCNA_00169 0.54 -1.3
182,267 + CCNA_00169 0.58 -2.9
182,267 + CCNA_00169 0.58 -1.1
182,275 - CCNA_00169 0.58 -1.2
182,277 + CCNA_00169 0.58 +0.3
182,310 - CCNA_00169 0.60 -0.9
182,317 - CCNA_00169 0.61 -1.0
182,326 - CCNA_00169 0.62 -1.3
182,403 - CCNA_00169 0.67 -2.3
182,419 + CCNA_00169 0.68 -0.9
182,433 + CCNA_00169 0.68 -0.5
182,438 + CCNA_00169 0.69 -1.7
182,440 + CCNA_00169 0.69 -1.7
182,478 - CCNA_00169 0.71 -1.5
182,525 - CCNA_00169 0.74 -1.7
182,538 + CCNA_00169 0.75 -1.3
182,538 + CCNA_00169 0.75 -0.1
182,563 + CCNA_00169 0.77 -1.0
182,597 + CCNA_00169 0.79 -0.3
182,597 + CCNA_00169 0.79 +0.7
182,608 - CCNA_00169 0.80 -0.9
182,629 + CCNA_00169 0.81 +0.1
182,630 + CCNA_00169 0.81 -1.0
182,758 + CCNA_00169 0.90 -0.3
182,766 + -1.4
182,766 - -2.2
182,771 + -0.3
182,771 + -0.1
182,779 - -1.2
182,779 - -1.9
182,779 - +0.1
182,811 - +1.1
182,811 - +0.6
182,843 + -0.5
182,857 - +0.6
182,881 + -1.6
182,881 + +0.2
182,920 - -1.0
182,949 + -1.5
182,952 + -0.2
183,016 + -0.1
183,018 - -0.3
183,128 + -1.6
183,136 - +0.6
183,232 + -1.8
183,239 + -1.6
183,244 + +0.4
183,272 + CCNA_00170 0.10 -1.6
183,280 - CCNA_00170 0.11 -1.4
183,296 - CCNA_00170 0.11 +1.1
183,297 - CCNA_00170 0.11 -2.5
183,339 - CCNA_00170 0.13 -0.9
183,339 - CCNA_00170 0.13 -0.3
183,374 + CCNA_00170 0.14 -0.7
183,382 - CCNA_00170 0.14 -0.9
183,382 - CCNA_00170 0.14 +0.4
183,382 - CCNA_00170 0.14 +2.1
183,397 + CCNA_00170 0.15 -0.8
183,397 + CCNA_00170 0.15 +0.1
183,397 + CCNA_00170 0.15 -0.0
183,397 + CCNA_00170 0.15 -1.0
183,405 - CCNA_00170 0.15 -1.2
183,405 - CCNA_00170 0.15 +0.4
183,405 - CCNA_00170 0.15 -0.5
183,405 - CCNA_00170 0.15 -0.4
183,431 - CCNA_00170 0.16 -1.1
183,592 - CCNA_00170 0.22 -1.2
183,606 + CCNA_00170 0.23 +0.3
183,608 - CCNA_00170 0.23 -0.6
183,653 + CCNA_00170 0.25 +1.6
183,702 + CCNA_00170 0.26 -1.1
183,707 + CCNA_00170 0.27 -1.2
183,707 + CCNA_00170 0.27 -0.4
183,707 + CCNA_00170 0.27 +0.6
183,710 - CCNA_00170 0.27 -0.3
183,712 + CCNA_00170 0.27 -2.1
183,715 - CCNA_00170 0.27 +1.2
183,720 - CCNA_00170 0.27 +0.2
183,720 - CCNA_00170 0.27 +0.7
183,730 - CCNA_00170 0.27 +0.6
183,750 + +2.1
183,758 - CCNA_00170 0.29 -1.6
183,782 - +2.7
183,815 + CCNA_00170 0.31 +1.1
183,846 - CCNA_00170 0.32 +0.4
183,887 + CCNA_00170 0.33 +1.7
183,898 + CCNA_00170 0.34 -0.6
183,907 + CCNA_00170 0.34 -1.8
183,911 + CCNA_00170 0.34 -0.7

Or see this region's nucleotide sequence