Experiment: PYE with Gentamicin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00161 and CCNA_00162 are separated by 71 nucleotides CCNA_00162 and CCNA_00163 are separated by 46 nucleotides
CCNA_00161: CCNA_00161 - hypothetical protein, at 170,951 to 171,577
_00161
CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917
_00162
CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183
_00163
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 170.727 kb on + strand at 170.735 kb on - strand at 170.798 kb on - strand at 170.907 kb on + strand at 170.915 kb on - strand at 170.963 kb on + strand at 171.085 kb on + strand, within CCNA_00161 at 171.266 kb on + strand, within CCNA_00161 at 171.266 kb on + strand, within CCNA_00161 at 171.405 kb on + strand, within CCNA_00161 at 171.421 kb on + strand, within CCNA_00161 at 171.438 kb on + strand, within CCNA_00161 at 171.464 kb on + strand, within CCNA_00161 at 171.528 kb on - strand at 171.640 kb on + strand at 171.721 kb on + strand at 171.836 kb on + strand, within CCNA_00162 at 171.861 kb on + strand, within CCNA_00162 at 171.897 kb on + strand, within CCNA_00162 at 171.943 kb on + strand, within CCNA_00162 at 171.950 kb on + strand, within CCNA_00162 at 171.982 kb on - strand, within CCNA_00162 at 172.024 kb on + strand, within CCNA_00162 at 172.058 kb on + strand, within CCNA_00162 at 172.068 kb on + strand, within CCNA_00162 at 172.073 kb on + strand, within CCNA_00162 at 172.111 kb on + strand, within CCNA_00162 at 172.236 kb on + strand, within CCNA_00162 at 172.494 kb on + strand, within CCNA_00162 at 172.601 kb on + strand, within CCNA_00162 at 172.906 kb on + strand at 172.911 kb on + strand at 172.961 kb on + strand at 173.155 kb on + strand at 173.155 kb on + strand at 173.155 kb on + strand at 173.155 kb on + strand at 173.163 kb on - strand at 173.163 kb on - strand at 173.291 kb on - strand, within CCNA_00163 at 173.332 kb on + strand, within CCNA_00163 at 173.340 kb on - strand, within CCNA_00163 at 173.359 kb on + strand, within CCNA_00163 at 173.434 kb on - strand, within CCNA_00163 at 173.457 kb on + strand, within CCNA_00163 at 173.477 kb on + strand, within CCNA_00163 at 173.618 kb on + strand, within CCNA_00163 at 173.628 kb on + strand, within CCNA_00163 at 173.658 kb on - strand, within CCNA_00163 at 173.713 kb on + strand, within CCNA_00163 at 173.798 kb on + strand, within CCNA_00163 at 173.806 kb on - strand, within CCNA_00163 at 173.806 kb on - strand, within CCNA_00163 at 173.835 kb on + strand, within CCNA_00163 at 173.835 kb on + strand, within CCNA_00163
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml remove 170,727 + +0.3 170,735 - +0.2 170,798 - -0.5 170,907 + +1.4 170,915 - +0.9 170,963 + +2.8 171,085 + CCNA_00161 0.21 +3.2 171,266 + CCNA_00161 0.50 +3.2 171,266 + CCNA_00161 0.50 +2.8 171,405 + CCNA_00161 0.72 +2.8 171,421 + CCNA_00161 0.75 +3.4 171,438 + CCNA_00161 0.78 +3.1 171,464 + CCNA_00161 0.82 +3.4 171,528 - +1.7 171,640 + +3.3 171,721 + +2.5 171,836 + CCNA_00162 0.15 +2.3 171,861 + CCNA_00162 0.17 +2.3 171,897 + CCNA_00162 0.20 +3.7 171,943 + CCNA_00162 0.23 +1.4 171,950 + CCNA_00162 0.24 +1.9 171,982 - CCNA_00162 0.26 +0.2 172,024 + CCNA_00162 0.30 +2.3 172,058 + CCNA_00162 0.32 +3.3 172,068 + CCNA_00162 0.33 +2.3 172,073 + CCNA_00162 0.33 +2.0 172,111 + CCNA_00162 0.36 +2.2 172,236 + CCNA_00162 0.46 +1.6 172,494 + CCNA_00162 0.67 +2.4 172,601 + CCNA_00162 0.75 +3.3 172,906 + +3.5 172,911 + +2.1 172,961 + +3.3 173,155 + +1.3 173,155 + +1.5 173,155 + +1.2 173,155 + +0.8 173,163 - -1.1 173,163 - -0.5 173,291 - CCNA_00163 0.15 -1.1 173,332 + CCNA_00163 0.17 +0.5 173,340 - CCNA_00163 0.17 -1.4 173,359 + CCNA_00163 0.18 +1.3 173,434 - CCNA_00163 0.21 -0.4 173,457 + CCNA_00163 0.22 +0.7 173,477 + CCNA_00163 0.23 +1.6 173,618 + CCNA_00163 0.29 +0.6 173,628 + CCNA_00163 0.30 +1.4 173,658 - CCNA_00163 0.31 -0.3 173,713 + CCNA_00163 0.34 +0.8 173,798 + CCNA_00163 0.38 +0.2 173,806 - CCNA_00163 0.38 -2.1 173,806 - CCNA_00163 0.38 -2.6 173,835 + CCNA_00163 0.39 +1.4 173,835 + CCNA_00163 0.39 +0.6
Or see this region's nucleotide sequence