Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00161

Experiment: PYE with Gentamicin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00160 and CCNA_00161 are separated by 424 nucleotidesCCNA_00161 and CCNA_00162 are separated by 71 nucleotides CCNA_00160: CCNA_00160 - methyl-accepting chemotaxis protein, at 169,387 to 170,526 _00160 CCNA_00161: CCNA_00161 - hypothetical protein, at 170,951 to 171,577 _00161 CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917 _00162 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1 2 3at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 170.057 kb on + strand, within CCNA_00160at 170.057 kb on + strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.068 kb on + strand, within CCNA_00160at 170.115 kb on + strand, within CCNA_00160at 170.118 kb on - strand, within CCNA_00160at 170.123 kb on - strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.135 kb on - strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.196 kb on - strand, within CCNA_00160at 170.201 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.216 kb on + strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.235 kb on + strand, within CCNA_00160at 170.238 kb on - strand, within CCNA_00160at 170.260 kb on + strand, within CCNA_00160at 170.267 kb on + strand, within CCNA_00160at 170.267 kb on + strand, within CCNA_00160at 170.268 kb on - strand, within CCNA_00160at 170.268 kb on - strand, within CCNA_00160at 170.299 kb on + strand, within CCNA_00160at 170.307 kb on - strand, within CCNA_00160at 170.347 kb on - strand, within CCNA_00160at 170.353 kb on + strand, within CCNA_00160at 170.360 kb on - strand, within CCNA_00160at 170.368 kb on + strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.368 kb on - strand, within CCNA_00160at 170.373 kb on - strand, within CCNA_00160at 170.373 kb on - strand, within CCNA_00160at 170.477 kb on + strandat 170.482 kb on + strandat 170.512 kb on + strandat 170.541 kb on - strandat 170.559 kb on - strandat 170.581 kb on + strandat 170.588 kb on - strandat 170.609 kb on - strandat 170.621 kb on - strandat 170.727 kb on + strandat 170.735 kb on - strandat 170.798 kb on - strandat 170.907 kb on + strandat 170.915 kb on - strandat 170.963 kb on + strandat 171.085 kb on + strand, within CCNA_00161at 171.266 kb on + strand, within CCNA_00161at 171.266 kb on + strand, within CCNA_00161at 171.405 kb on + strand, within CCNA_00161at 171.421 kb on + strand, within CCNA_00161at 171.438 kb on + strand, within CCNA_00161at 171.464 kb on + strand, within CCNA_00161at 171.528 kb on - strandat 171.640 kb on + strandat 171.721 kb on + strandat 171.836 kb on + strand, within CCNA_00162at 171.861 kb on + strand, within CCNA_00162at 171.897 kb on + strand, within CCNA_00162at 171.943 kb on + strand, within CCNA_00162at 171.950 kb on + strand, within CCNA_00162at 171.982 kb on - strand, within CCNA_00162at 172.024 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.068 kb on + strand, within CCNA_00162at 172.073 kb on + strand, within CCNA_00162at 172.111 kb on + strand, within CCNA_00162at 172.236 kb on + strand, within CCNA_00162at 172.494 kb on + strand, within CCNA_00162

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Gentamicin 0.0005 mg/ml
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169,978 + CCNA_00160 0.52 -0.6
169,978 + CCNA_00160 0.52 +0.0
169,978 + CCNA_00160 0.52 -0.7
169,978 + CCNA_00160 0.52 -0.8
169,986 - CCNA_00160 0.53 -1.0
169,986 - CCNA_00160 0.53 -2.4
169,986 - CCNA_00160 0.53 -0.4
170,057 + CCNA_00160 0.59 -1.0
170,057 + CCNA_00160 0.59 -0.2
170,065 - CCNA_00160 0.59 -1.5
170,065 - CCNA_00160 0.59 -0.7
170,065 - CCNA_00160 0.59 -0.1
170,068 + CCNA_00160 0.60 -0.6
170,068 + CCNA_00160 0.60 -0.3
170,068 + CCNA_00160 0.60 +0.6
170,115 + CCNA_00160 0.64 +0.2
170,118 - CCNA_00160 0.64 -0.5
170,123 - CCNA_00160 0.65 -1.1
170,125 + CCNA_00160 0.65 -0.5
170,125 + CCNA_00160 0.65 -1.7
170,125 + CCNA_00160 0.65 +1.1
170,135 - CCNA_00160 0.66 -1.0
170,194 + CCNA_00160 0.71 +0.1
170,194 + CCNA_00160 0.71 -1.2
170,194 + CCNA_00160 0.71 +1.0
170,194 + CCNA_00160 0.71 -0.6
170,196 - CCNA_00160 0.71 +0.5
170,201 - CCNA_00160 0.71 -0.8
170,202 - CCNA_00160 0.71 -0.1
170,202 - CCNA_00160 0.71 -0.4
170,202 - CCNA_00160 0.71 -0.9
170,202 - CCNA_00160 0.71 -0.4
170,202 - CCNA_00160 0.71 -0.7
170,216 + CCNA_00160 0.73 -1.9
170,230 + CCNA_00160 0.74 +0.2
170,235 + CCNA_00160 0.74 -0.6
170,238 - CCNA_00160 0.75 -0.4
170,260 + CCNA_00160 0.77 -0.5
170,267 + CCNA_00160 0.77 +2.7
170,267 + CCNA_00160 0.77 +2.4
170,268 - CCNA_00160 0.77 -0.4
170,268 - CCNA_00160 0.77 -0.5
170,299 + CCNA_00160 0.80 +0.1
170,307 - CCNA_00160 0.81 +0.9
170,347 - CCNA_00160 0.84 -2.1
170,353 + CCNA_00160 0.85 -1.2
170,360 - CCNA_00160 0.85 +1.2
170,368 + CCNA_00160 0.86 -2.1
170,368 - CCNA_00160 0.86 -0.9
170,368 - CCNA_00160 0.86 +0.7
170,368 - CCNA_00160 0.86 -2.2
170,373 - CCNA_00160 0.86 -0.6
170,373 - CCNA_00160 0.86 -1.6
170,477 + -1.0
170,482 + -1.3
170,512 + -0.5
170,541 - +1.1
170,559 - +1.5
170,581 + -0.5
170,588 - -0.7
170,609 - +0.3
170,621 - +0.7
170,727 + +0.3
170,735 - +0.2
170,798 - -0.5
170,907 + +1.4
170,915 - +0.9
170,963 + +2.8
171,085 + CCNA_00161 0.21 +3.2
171,266 + CCNA_00161 0.50 +3.2
171,266 + CCNA_00161 0.50 +2.8
171,405 + CCNA_00161 0.72 +2.8
171,421 + CCNA_00161 0.75 +3.4
171,438 + CCNA_00161 0.78 +3.1
171,464 + CCNA_00161 0.82 +3.4
171,528 - +1.7
171,640 + +3.3
171,721 + +2.5
171,836 + CCNA_00162 0.15 +2.3
171,861 + CCNA_00162 0.17 +2.3
171,897 + CCNA_00162 0.20 +3.7
171,943 + CCNA_00162 0.23 +1.4
171,950 + CCNA_00162 0.24 +1.9
171,982 - CCNA_00162 0.26 +0.2
172,024 + CCNA_00162 0.30 +2.3
172,058 + CCNA_00162 0.32 +3.3
172,068 + CCNA_00162 0.33 +2.3
172,073 + CCNA_00162 0.33 +2.0
172,111 + CCNA_00162 0.36 +2.2
172,236 + CCNA_00162 0.46 +1.6
172,494 + CCNA_00162 0.67 +2.4

Or see this region's nucleotide sequence