Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36585

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS36575 and BPHYT_RS36580 are separated by 46 nucleotidesBPHYT_RS36580 and BPHYT_RS36585 are separated by 134 nucleotidesBPHYT_RS36585 and BPHYT_RS36590 are separated by 51 nucleotidesBPHYT_RS36590 and BPHYT_RS36595 are separated by 191 nucleotides BPHYT_RS36575: BPHYT_RS36575 - hypothetical protein, at 117,242 to 117,781 _RS36575 BPHYT_RS36580: BPHYT_RS36580 - hypothetical protein, at 117,828 to 118,277 _RS36580 BPHYT_RS36585: BPHYT_RS36585 - hypothetical protein, at 118,412 to 119,104 _RS36585 BPHYT_RS36590: BPHYT_RS36590 - hypothetical protein, at 119,156 to 119,395 _RS36590 BPHYT_RS36595: BPHYT_RS36595 - hypothetical protein, at 119,587 to 120,114 _RS36595 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 117.779 kb on + strandat 117.786 kb on - strandat 117.892 kb on + strand, within BPHYT_RS36580at 117.898 kb on - strand, within BPHYT_RS36580at 117.898 kb on - strand, within BPHYT_RS36580at 117.949 kb on + strand, within BPHYT_RS36580at 117.950 kb on - strand, within BPHYT_RS36580at 118.002 kb on + strand, within BPHYT_RS36580at 118.002 kb on + strand, within BPHYT_RS36580at 118.002 kb on + strand, within BPHYT_RS36580at 118.003 kb on - strand, within BPHYT_RS36580at 118.102 kb on - strand, within BPHYT_RS36580at 118.317 kb on + strandat 118.317 kb on + strandat 118.395 kb on + strandat 118.395 kb on + strandat 118.395 kb on + strandat 118.396 kb on - strandat 118.396 kb on - strandat 118.413 kb on + strandat 118.413 kb on + strandat 118.414 kb on - strandat 118.464 kb on + strandat 118.464 kb on + strandat 118.670 kb on + strand, within BPHYT_RS36585at 118.968 kb on - strand, within BPHYT_RS36585at 119.001 kb on + strand, within BPHYT_RS36585at 119.157 kb on + strandat 119.157 kb on + strandat 119.289 kb on + strand, within BPHYT_RS36590at 119.289 kb on + strand, within BPHYT_RS36590at 119.292 kb on + strand, within BPHYT_RS36590at 119.536 kb on - strandat 119.862 kb on + strand, within BPHYT_RS36595at 119.890 kb on + strand, within BPHYT_RS36595at 119.995 kb on + strand, within BPHYT_RS36595at 120.030 kb on + strand, within BPHYT_RS36595at 120.046 kb on + strand, within BPHYT_RS36595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
117,779 + -1.0
117,786 - -0.5
117,892 + BPHYT_RS36580 0.14 -0.4
117,898 - BPHYT_RS36580 0.16 +0.3
117,898 - BPHYT_RS36580 0.16 -0.7
117,949 + BPHYT_RS36580 0.27 -0.4
117,950 - BPHYT_RS36580 0.27 -0.6
118,002 + BPHYT_RS36580 0.39 +0.2
118,002 + BPHYT_RS36580 0.39 -0.6
118,002 + BPHYT_RS36580 0.39 +1.6
118,003 - BPHYT_RS36580 0.39 +0.5
118,102 - BPHYT_RS36580 0.61 +1.1
118,317 + -1.2
118,317 + -0.8
118,395 + -0.2
118,395 + -0.1
118,395 + +0.8
118,396 - +1.0
118,396 - +0.4
118,413 + -0.3
118,413 + -0.1
118,414 - +0.6
118,464 + +0.3
118,464 + +0.2
118,670 + BPHYT_RS36585 0.37 -2.2
118,968 - BPHYT_RS36585 0.80 -0.2
119,001 + BPHYT_RS36585 0.85 -0.7
119,157 + +0.4
119,157 + -0.3
119,289 + BPHYT_RS36590 0.55 +0.5
119,289 + BPHYT_RS36590 0.55 -0.2
119,292 + BPHYT_RS36590 0.57 +0.6
119,536 - -0.5
119,862 + BPHYT_RS36595 0.52 +0.1
119,890 + BPHYT_RS36595 0.57 -0.4
119,995 + BPHYT_RS36595 0.77 -0.2
120,030 + BPHYT_RS36595 0.84 -0.6
120,046 + BPHYT_RS36595 0.87 +0.6

Or see this region's nucleotide sequence