Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35420

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35415 and BPHYT_RS35420 are separated by 629 nucleotidesBPHYT_RS35420 and BPHYT_RS35425 are separated by 322 nucleotides BPHYT_RS35415: BPHYT_RS35415 - DEAD/DEAH box helicase, at 3,545,453 to 3,546,892 _RS35415 BPHYT_RS35420: BPHYT_RS35420 - alanine dehydrogenase, at 3,547,522 to 3,548,640 _RS35420 BPHYT_RS35425: BPHYT_RS35425 - AraC family transcriptional regulator, at 3,548,963 to 3,549,796 _RS35425 Position (kb) 3547 3548 3549Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3546.635 kb on - strand, within BPHYT_RS35415at 3546.763 kb on + strandat 3546.850 kb on + strandat 3546.928 kb on - strandat 3546.952 kb on + strandat 3546.952 kb on + strandat 3546.953 kb on - strandat 3547.115 kb on + strandat 3547.116 kb on - strandat 3547.281 kb on + strandat 3547.407 kb on + strandat 3547.450 kb on + strandat 3547.519 kb on - strandat 3547.614 kb on + strandat 3547.615 kb on - strandat 3547.669 kb on + strand, within BPHYT_RS35420at 3547.801 kb on + strand, within BPHYT_RS35420at 3547.870 kb on + strand, within BPHYT_RS35420at 3547.871 kb on - strand, within BPHYT_RS35420at 3547.995 kb on - strand, within BPHYT_RS35420at 3548.383 kb on + strandat 3548.383 kb on + strand, within BPHYT_RS35420at 3548.421 kb on + strand, within BPHYT_RS35420at 3548.421 kb on + strand, within BPHYT_RS35420at 3548.422 kb on - strand, within BPHYT_RS35420at 3548.533 kb on + strandat 3548.534 kb on - strandat 3548.603 kb on + strandat 3548.604 kb on - strandat 3548.608 kb on - strandat 3548.608 kb on - strandat 3548.608 kb on - strandat 3548.608 kb on - strandat 3548.656 kb on + strandat 3549.097 kb on + strand, within BPHYT_RS35425at 3549.151 kb on - strand, within BPHYT_RS35425at 3549.228 kb on + strand, within BPHYT_RS35425at 3549.259 kb on - strand, within BPHYT_RS35425at 3549.309 kb on + strand, within BPHYT_RS35425at 3549.363 kb on + strand, within BPHYT_RS35425at 3549.430 kb on + strand, within BPHYT_RS35425at 3549.430 kb on + strand, within BPHYT_RS35425at 3549.431 kb on - strand, within BPHYT_RS35425

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,546,635 - BPHYT_RS35415 0.82 -0.9
3,546,763 + -0.5
3,546,850 + +0.3
3,546,928 - +0.2
3,546,952 + -2.2
3,546,952 + +0.4
3,546,953 - +0.1
3,547,115 + +0.1
3,547,116 - +0.0
3,547,281 + -0.6
3,547,407 + -0.4
3,547,450 + -1.4
3,547,519 - -1.1
3,547,614 + -1.5
3,547,615 - -2.1
3,547,669 + BPHYT_RS35420 0.13 -0.5
3,547,801 + BPHYT_RS35420 0.25 +1.0
3,547,870 + BPHYT_RS35420 0.31 -2.0
3,547,871 - BPHYT_RS35420 0.31 -0.3
3,547,995 - BPHYT_RS35420 0.42 -1.0
3,548,383 + +2.7
3,548,383 + BPHYT_RS35420 0.77 +0.2
3,548,421 + BPHYT_RS35420 0.80 +0.8
3,548,421 + BPHYT_RS35420 0.80 +0.7
3,548,422 - BPHYT_RS35420 0.80 -1.4
3,548,533 + -1.1
3,548,534 - -1.5
3,548,603 + +0.7
3,548,604 - +2.9
3,548,608 - -0.3
3,548,608 - -0.3
3,548,608 - +1.0
3,548,608 - -0.9
3,548,656 + +0.5
3,549,097 + BPHYT_RS35425 0.16 +0.3
3,549,151 - BPHYT_RS35425 0.23 -0.7
3,549,228 + BPHYT_RS35425 0.32 -1.3
3,549,259 - BPHYT_RS35425 0.35 -0.1
3,549,309 + BPHYT_RS35425 0.41 +0.7
3,549,363 + BPHYT_RS35425 0.48 +0.2
3,549,430 + BPHYT_RS35425 0.56 -1.5
3,549,430 + BPHYT_RS35425 0.56 +0.2
3,549,431 - BPHYT_RS35425 0.56 -0.1

Or see this region's nucleotide sequence