Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35415 and BPHYT_RS35420 are separated by 629 nucleotides BPHYT_RS35420 and BPHYT_RS35425 are separated by 322 nucleotides
BPHYT_RS35415: BPHYT_RS35415 - DEAD/DEAH box helicase, at 3,545,453 to 3,546,892
_RS35415
BPHYT_RS35420: BPHYT_RS35420 - alanine dehydrogenase, at 3,547,522 to 3,548,640
_RS35420
BPHYT_RS35425: BPHYT_RS35425 - AraC family transcriptional regulator, at 3,548,963 to 3,549,796
_RS35425
Position (kb)
3547
3548
3549 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3546.635 kb on - strand, within BPHYT_RS35415 at 3546.763 kb on + strand at 3546.850 kb on + strand at 3546.928 kb on - strand at 3546.952 kb on + strand at 3546.952 kb on + strand at 3546.953 kb on - strand at 3547.115 kb on + strand at 3547.116 kb on - strand at 3547.281 kb on + strand at 3547.407 kb on + strand at 3547.450 kb on + strand at 3547.519 kb on - strand at 3547.614 kb on + strand at 3547.615 kb on - strand at 3547.669 kb on + strand, within BPHYT_RS35420 at 3547.801 kb on + strand, within BPHYT_RS35420 at 3547.870 kb on + strand, within BPHYT_RS35420 at 3547.871 kb on - strand, within BPHYT_RS35420 at 3547.995 kb on - strand, within BPHYT_RS35420 at 3548.383 kb on + strand at 3548.383 kb on + strand, within BPHYT_RS35420 at 3548.421 kb on + strand, within BPHYT_RS35420 at 3548.421 kb on + strand, within BPHYT_RS35420 at 3548.422 kb on - strand, within BPHYT_RS35420 at 3548.533 kb on + strand at 3548.534 kb on - strand at 3548.603 kb on + strand at 3548.604 kb on - strand at 3548.608 kb on - strand at 3548.608 kb on - strand at 3548.608 kb on - strand at 3548.608 kb on - strand at 3548.656 kb on + strand at 3549.097 kb on + strand, within BPHYT_RS35425 at 3549.151 kb on - strand, within BPHYT_RS35425 at 3549.228 kb on + strand, within BPHYT_RS35425 at 3549.259 kb on - strand, within BPHYT_RS35425 at 3549.309 kb on + strand, within BPHYT_RS35425 at 3549.363 kb on + strand, within BPHYT_RS35425 at 3549.430 kb on + strand, within BPHYT_RS35425 at 3549.430 kb on + strand, within BPHYT_RS35425 at 3549.431 kb on - strand, within BPHYT_RS35425
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,546,635 - BPHYT_RS35415 0.82 -0.9 3,546,763 + -0.5 3,546,850 + +0.3 3,546,928 - +0.2 3,546,952 + -2.2 3,546,952 + +0.4 3,546,953 - +0.1 3,547,115 + +0.1 3,547,116 - +0.0 3,547,281 + -0.6 3,547,407 + -0.4 3,547,450 + -1.4 3,547,519 - -1.1 3,547,614 + -1.5 3,547,615 - -2.1 3,547,669 + BPHYT_RS35420 0.13 -0.5 3,547,801 + BPHYT_RS35420 0.25 +1.0 3,547,870 + BPHYT_RS35420 0.31 -2.0 3,547,871 - BPHYT_RS35420 0.31 -0.3 3,547,995 - BPHYT_RS35420 0.42 -1.0 3,548,383 + +2.7 3,548,383 + BPHYT_RS35420 0.77 +0.2 3,548,421 + BPHYT_RS35420 0.80 +0.8 3,548,421 + BPHYT_RS35420 0.80 +0.7 3,548,422 - BPHYT_RS35420 0.80 -1.4 3,548,533 + -1.1 3,548,534 - -1.5 3,548,603 + +0.7 3,548,604 - +2.9 3,548,608 - -0.3 3,548,608 - -0.3 3,548,608 - +1.0 3,548,608 - -0.9 3,548,656 + +0.5 3,549,097 + BPHYT_RS35425 0.16 +0.3 3,549,151 - BPHYT_RS35425 0.23 -0.7 3,549,228 + BPHYT_RS35425 0.32 -1.3 3,549,259 - BPHYT_RS35425 0.35 -0.1 3,549,309 + BPHYT_RS35425 0.41 +0.7 3,549,363 + BPHYT_RS35425 0.48 +0.2 3,549,430 + BPHYT_RS35425 0.56 -1.5 3,549,430 + BPHYT_RS35425 0.56 +0.2 3,549,431 - BPHYT_RS35425 0.56 -0.1
Or see this region's nucleotide sequence