Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33860 and BPHYT_RS33865 are separated by 80 nucleotides BPHYT_RS33865 and BPHYT_RS33870 are separated by 50 nucleotides BPHYT_RS33870 and BPHYT_RS33875 are separated by 11 nucleotides
BPHYT_RS33860: BPHYT_RS33860 - acetyl-CoA carboxylase carboxyl transferase subunit beta, at 3,188,745 to 3,189,617
_RS33860
BPHYT_RS33865: BPHYT_RS33865 - tryptophan synthase alpha chain, at 3,189,698 to 3,190,510
_RS33865
BPHYT_RS33870: BPHYT_RS33870 - DNA methylase N-4, at 3,190,561 to 3,191,466
_RS33870
BPHYT_RS33875: BPHYT_RS33875 - tryptophan synthase subunit alpha, at 3,191,478 to 3,192,671
_RS33875
Position (kb) 3189
3190
3191 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 3189.693 kb on - strand at 3189.984 kb on + strand, within BPHYT_RS33865 at 3189.984 kb on + strand, within BPHYT_RS33865 at 3189.984 kb on + strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.985 kb on - strand, within BPHYT_RS33865 at 3189.988 kb on - strand, within BPHYT_RS33865 at 3189.988 kb on - strand, within BPHYT_RS33865 at 3189.988 kb on - strand, within BPHYT_RS33865 at 3189.993 kb on + strand, within BPHYT_RS33865 at 3189.993 kb on + strand, within BPHYT_RS33865 at 3190.024 kb on + strand, within BPHYT_RS33865 at 3190.099 kb on + strand, within BPHYT_RS33865 at 3190.466 kb on - strand at 3190.502 kb on - strand at 3190.515 kb on + strand at 3190.515 kb on + strand at 3190.881 kb on - strand, within BPHYT_RS33870 at 3190.881 kb on - strand, within BPHYT_RS33870 at 3190.899 kb on + strand, within BPHYT_RS33870 at 3190.900 kb on - strand, within BPHYT_RS33870 at 3190.900 kb on - strand, within BPHYT_RS33870 at 3191.153 kb on + strand, within BPHYT_RS33870 at 3191.184 kb on + strand, within BPHYT_RS33870 at 3191.255 kb on + strand, within BPHYT_RS33870 at 3191.255 kb on + strand, within BPHYT_RS33870 at 3191.288 kb on - strand, within BPHYT_RS33870 at 3191.323 kb on + strand, within BPHYT_RS33870 at 3191.324 kb on - strand, within BPHYT_RS33870
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,189,693 - +0.6 3,189,984 + BPHYT_RS33865 0.35 -3.0 3,189,984 + BPHYT_RS33865 0.35 -4.2 3,189,984 + BPHYT_RS33865 0.35 -2.4 3,189,985 - BPHYT_RS33865 0.35 -2.6 3,189,985 - BPHYT_RS33865 0.35 -2.7 3,189,985 - BPHYT_RS33865 0.35 -3.6 3,189,985 - BPHYT_RS33865 0.35 -1.2 3,189,985 - BPHYT_RS33865 0.35 -3.3 3,189,988 - BPHYT_RS33865 0.36 -1.4 3,189,988 - BPHYT_RS33865 0.36 -4.4 3,189,988 - BPHYT_RS33865 0.36 -2.7 3,189,993 + BPHYT_RS33865 0.36 -2.3 3,189,993 + BPHYT_RS33865 0.36 -3.6 3,190,024 + BPHYT_RS33865 0.40 -5.0 3,190,099 + BPHYT_RS33865 0.49 -2.4 3,190,466 - -0.7 3,190,502 - -3.6 3,190,515 + -2.5 3,190,515 + -2.6 3,190,881 - BPHYT_RS33870 0.35 -1.2 3,190,881 - BPHYT_RS33870 0.35 +0.0 3,190,899 + BPHYT_RS33870 0.37 +0.3 3,190,900 - BPHYT_RS33870 0.37 +0.3 3,190,900 - BPHYT_RS33870 0.37 +0.2 3,191,153 + BPHYT_RS33870 0.65 +0.7 3,191,184 + BPHYT_RS33870 0.69 -0.0 3,191,255 + BPHYT_RS33870 0.77 -0.4 3,191,255 + BPHYT_RS33870 0.77 +0.3 3,191,288 - BPHYT_RS33870 0.80 +0.4 3,191,323 + BPHYT_RS33870 0.84 -2.9 3,191,324 - BPHYT_RS33870 0.84 +1.3
Or see this region's nucleotide sequence