Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32490

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32485 and BPHYT_RS32490 overlap by 4 nucleotidesBPHYT_RS32490 and BPHYT_RS32495 are separated by 33 nucleotidesBPHYT_RS32495 and BPHYT_RS32500 overlap by 4 nucleotides BPHYT_RS32485: BPHYT_RS32485 - microcystin LR degradation protein MlrC, at 2,859,962 to 2,861,452 _RS32485 BPHYT_RS32490: BPHYT_RS32490 - allantoate amidohydrolase, at 2,861,449 to 2,862,729 _RS32490 BPHYT_RS32495: BPHYT_RS32495 - ABC transporter, at 2,862,763 to 2,863,464 _RS32495 BPHYT_RS32500: BPHYT_RS32500 - ABC transporter, at 2,863,461 to 2,864,228 _RS32500 Position (kb) 2861 2862 2863Strain fitness (log2 ratio) -1 0 1at 2860.965 kb on + strand, within BPHYT_RS32485at 2860.969 kb on + strand, within BPHYT_RS32485at 2860.970 kb on - strand, within BPHYT_RS32485at 2860.983 kb on + strand, within BPHYT_RS32485at 2861.359 kb on - strandat 2861.730 kb on - strand, within BPHYT_RS32490at 2862.013 kb on - strand, within BPHYT_RS32490at 2862.097 kb on - strand, within BPHYT_RS32490at 2862.130 kb on - strand, within BPHYT_RS32490at 2862.836 kb on + strand, within BPHYT_RS32495at 2863.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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2,860,965 + BPHYT_RS32485 0.67 -1.1
2,860,969 + BPHYT_RS32485 0.68 +0.4
2,860,970 - BPHYT_RS32485 0.68 -0.1
2,860,983 + BPHYT_RS32485 0.68 +0.3
2,861,359 - -0.7
2,861,730 - BPHYT_RS32490 0.22 +0.2
2,862,013 - BPHYT_RS32490 0.44 -1.3
2,862,097 - BPHYT_RS32490 0.51 +0.1
2,862,130 - BPHYT_RS32490 0.53 -0.1
2,862,836 + BPHYT_RS32495 0.10 +0.1
2,863,496 - -0.4

Or see this region's nucleotide sequence