Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS32485 and BPHYT_RS32490 overlap by 4 nucleotides BPHYT_RS32490 and BPHYT_RS32495 are separated by 33 nucleotides BPHYT_RS32495 and BPHYT_RS32500 overlap by 4 nucleotides
BPHYT_RS32485: BPHYT_RS32485 - microcystin LR degradation protein MlrC, at 2,859,962 to 2,861,452
_RS32485
BPHYT_RS32490: BPHYT_RS32490 - allantoate amidohydrolase, at 2,861,449 to 2,862,729
_RS32490
BPHYT_RS32495: BPHYT_RS32495 - ABC transporter, at 2,862,763 to 2,863,464
_RS32495
BPHYT_RS32500: BPHYT_RS32500 - ABC transporter, at 2,863,461 to 2,864,228
_RS32500
Position (kb)
2861
2862
2863 Strain fitness (log2 ratio)
-1
0
1 at 2860.965 kb on + strand, within BPHYT_RS32485 at 2860.969 kb on + strand, within BPHYT_RS32485 at 2860.970 kb on - strand, within BPHYT_RS32485 at 2860.983 kb on + strand, within BPHYT_RS32485 at 2861.359 kb on - strand at 2861.730 kb on - strand, within BPHYT_RS32490 at 2862.013 kb on - strand, within BPHYT_RS32490 at 2862.097 kb on - strand, within BPHYT_RS32490 at 2862.130 kb on - strand, within BPHYT_RS32490 at 2862.836 kb on + strand, within BPHYT_RS32495 at 2863.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 2,860,965 + BPHYT_RS32485 0.67 -1.1 2,860,969 + BPHYT_RS32485 0.68 +0.4 2,860,970 - BPHYT_RS32485 0.68 -0.1 2,860,983 + BPHYT_RS32485 0.68 +0.3 2,861,359 - -0.7 2,861,730 - BPHYT_RS32490 0.22 +0.2 2,862,013 - BPHYT_RS32490 0.44 -1.3 2,862,097 - BPHYT_RS32490 0.51 +0.1 2,862,130 - BPHYT_RS32490 0.53 -0.1 2,862,836 + BPHYT_RS32495 0.10 +0.1 2,863,496 - -0.4
Or see this region's nucleotide sequence