Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28260

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28250 and BPHYT_RS28255 are separated by 491 nucleotidesBPHYT_RS28255 and BPHYT_RS28260 are separated by 120 nucleotidesBPHYT_RS28260 and BPHYT_RS28265 are separated by 19 nucleotides BPHYT_RS28250: BPHYT_RS28250 - 3-oxoacyl-ACP reductase, at 1,895,580 to 1,896,332 _RS28250 BPHYT_RS28255: BPHYT_RS28255 - hypothetical protein, at 1,896,824 to 1,897,033 _RS28255 BPHYT_RS28260: BPHYT_RS28260 - oxidoreductase, at 1,897,154 to 1,897,852 _RS28260 BPHYT_RS28265: BPHYT_RS28265 - hypothetical protein, at 1,897,872 to 1,898,879 _RS28265 Position (kb) 1897 1898Strain fitness (log2 ratio) -2 -1 0 1at 1896.440 kb on + strandat 1896.440 kb on + strandat 1896.441 kb on - strandat 1896.897 kb on + strand, within BPHYT_RS28255at 1897.397 kb on + strand, within BPHYT_RS28260at 1897.663 kb on + strand, within BPHYT_RS28260at 1897.697 kb on - strand, within BPHYT_RS28260at 1898.209 kb on + strand, within BPHYT_RS28265at 1898.377 kb on - strand, within BPHYT_RS28265at 1898.377 kb on - strand, within BPHYT_RS28265at 1898.377 kb on - strand, within BPHYT_RS28265at 1898.618 kb on + strand, within BPHYT_RS28265at 1898.621 kb on - strand, within BPHYT_RS28265at 1898.621 kb on - strand, within BPHYT_RS28265at 1898.696 kb on + strand, within BPHYT_RS28265

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,896,440 + +0.1
1,896,440 + -0.6
1,896,441 - -0.8
1,896,897 + BPHYT_RS28255 0.35 -0.2
1,897,397 + BPHYT_RS28260 0.35 -0.1
1,897,663 + BPHYT_RS28260 0.73 -1.5
1,897,697 - BPHYT_RS28260 0.78 -2.0
1,898,209 + BPHYT_RS28265 0.33 +0.5
1,898,377 - BPHYT_RS28265 0.50 -1.4
1,898,377 - BPHYT_RS28265 0.50 -1.0
1,898,377 - BPHYT_RS28265 0.50 +0.0
1,898,618 + BPHYT_RS28265 0.74 -0.4
1,898,621 - BPHYT_RS28265 0.74 -0.0
1,898,621 - BPHYT_RS28265 0.74 -1.1
1,898,696 + BPHYT_RS28265 0.82 -0.6

Or see this region's nucleotide sequence