Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28000

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS27995 and BPHYT_RS28000 are separated by 310 nucleotidesBPHYT_RS28000 and BPHYT_RS28005 are separated by 191 nucleotidesBPHYT_RS28005 and BPHYT_RS28010 are separated by 78 nucleotides BPHYT_RS27995: BPHYT_RS27995 - hypothetical protein, at 1,844,982 to 1,845,854 _RS27995 BPHYT_RS28000: BPHYT_RS28000 - permease, at 1,846,165 to 1,847,250 _RS28000 BPHYT_RS28005: BPHYT_RS28005 - hypothetical protein, at 1,847,442 to 1,847,684 _RS28005 BPHYT_RS28010: BPHYT_RS28010 - hypothetical protein, at 1,847,763 to 1,847,945 _RS28010 Position (kb) 1846 1847 1848Strain fitness (log2 ratio) -1 0 1at 1845.849 kb on - strandat 1845.849 kb on - strandat 1845.855 kb on - strandat 1846.307 kb on - strand, within BPHYT_RS28000at 1846.419 kb on + strand, within BPHYT_RS28000at 1847.174 kb on + strandat 1847.174 kb on + strandat 1847.175 kb on - strandat 1847.175 kb on - strandat 1847.175 kb on - strandat 1848.227 kb on + strandat 1848.227 kb on + strandat 1848.228 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
1,845,849 - +0.6
1,845,849 - +0.1
1,845,855 - +0.9
1,846,307 - BPHYT_RS28000 0.13 -1.1
1,846,419 + BPHYT_RS28000 0.23 -1.2
1,847,174 + +0.7
1,847,174 + +0.1
1,847,175 - +0.1
1,847,175 - -0.1
1,847,175 - -0.5
1,848,227 + -0.3
1,848,227 + +0.5
1,848,228 - -1.3

Or see this region's nucleotide sequence