Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26805 and BPHYT_RS26810 are separated by 148 nucleotides BPHYT_RS26810 and BPHYT_RS26815 are separated by 164 nucleotides BPHYT_RS26815 and BPHYT_RS26820 overlap by 4 nucleotides
BPHYT_RS26805: BPHYT_RS26805 - methionine sulfoxide reductase B, at 1,586,922 to 1,587,446
_RS26805
BPHYT_RS26810: BPHYT_RS26810 - AsnC family transcriptional regulator, at 1,587,595 to 1,588,122
_RS26810
BPHYT_RS26815: BPHYT_RS26815 - 1-aminocyclopropane-1-carboxylate deaminase, at 1,588,287 to 1,589,303
_RS26815
BPHYT_RS26820: BPHYT_RS26820 - LysR family transcriptional regulator, at 1,589,300 to 1,590,187
_RS26820
Position (kb) 1588
1589
1590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1587.597 kb on - strand at 1588.455 kb on + strand, within BPHYT_RS26815 at 1588.753 kb on - strand, within BPHYT_RS26815 at 1588.860 kb on + strand, within BPHYT_RS26815 at 1589.241 kb on + strand at 1589.242 kb on - strand at 1589.277 kb on + strand at 1589.383 kb on - strand at 1589.616 kb on + strand, within BPHYT_RS26820 at 1589.679 kb on + strand, within BPHYT_RS26820 at 1590.139 kb on + strand at 1590.254 kb on + strand at 1590.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,587,597 - +0.5 1,588,455 + BPHYT_RS26815 0.17 +1.2 1,588,753 - BPHYT_RS26815 0.46 +2.0 1,588,860 + BPHYT_RS26815 0.56 +0.0 1,589,241 + +0.2 1,589,242 - -0.9 1,589,277 + +0.2 1,589,383 - -0.1 1,589,616 + BPHYT_RS26820 0.36 -1.8 1,589,679 + BPHYT_RS26820 0.43 -0.9 1,590,139 + +0.3 1,590,254 + -0.0 1,590,255 - -0.7
Or see this region's nucleotide sequence