Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22250

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22245 and BPHYT_RS22250 are separated by 74 nucleotidesBPHYT_RS22250 and BPHYT_RS22255 are separated by 5 nucleotidesBPHYT_RS22255 and BPHYT_RS22260 are separated by 58 nucleotidesBPHYT_RS22260 and BPHYT_RS22265 are separated by 106 nucleotides BPHYT_RS22245: BPHYT_RS22245 - transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data), at 548,109 to 549,590 _RS22245 BPHYT_RS22250: BPHYT_RS22250 - D-amino acid dehydrogenase, at 549,665 to 550,909 _RS22250 BPHYT_RS22255: BPHYT_RS22255 - hypothetical protein, at 550,915 to 551,259 _RS22255 BPHYT_RS22260: BPHYT_RS22260 - hypothetical protein, at 551,318 to 551,608 _RS22260 BPHYT_RS22265: BPHYT_RS22265 - hypothetical protein, at 551,715 to 552,506 _RS22265 Position (kb) 549 550 551Strain fitness (log2 ratio) -1 0 1 2at 548.700 kb on + strand, within BPHYT_RS22245at 548.700 kb on + strand, within BPHYT_RS22245at 548.700 kb on + strand, within BPHYT_RS22245at 548.701 kb on - strand, within BPHYT_RS22245at 548.781 kb on + strand, within BPHYT_RS22245at 548.782 kb on - strand, within BPHYT_RS22245at 548.892 kb on - strand, within BPHYT_RS22245at 549.367 kb on - strand, within BPHYT_RS22245at 549.501 kb on + strandat 549.501 kb on + strandat 549.502 kb on - strandat 549.502 kb on - strandat 549.857 kb on - strand, within BPHYT_RS22250at 550.087 kb on - strand, within BPHYT_RS22250at 550.917 kb on - strandat 550.917 kb on - strandat 550.919 kb on - strandat 550.919 kb on - strandat 551.070 kb on - strand, within BPHYT_RS22255at 551.267 kb on + strandat 551.345 kb on + strandat 551.516 kb on - strand, within BPHYT_RS22260at 551.606 kb on + strandat 551.607 kb on - strandat 551.623 kb on + strandat 551.715 kb on - strandat 551.768 kb on - strandat 551.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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548,700 + BPHYT_RS22245 0.40 +0.2
548,700 + BPHYT_RS22245 0.40 -0.0
548,700 + BPHYT_RS22245 0.40 +0.3
548,701 - BPHYT_RS22245 0.40 +0.5
548,781 + BPHYT_RS22245 0.45 +0.2
548,782 - BPHYT_RS22245 0.45 -0.6
548,892 - BPHYT_RS22245 0.53 +0.5
549,367 - BPHYT_RS22245 0.85 +0.1
549,501 + -1.6
549,501 + +0.5
549,502 - -0.0
549,502 - +0.1
549,857 - BPHYT_RS22250 0.15 +0.3
550,087 - BPHYT_RS22250 0.34 +0.2
550,917 - +1.8
550,917 - -0.2
550,919 - +1.3
550,919 - -1.4
551,070 - BPHYT_RS22255 0.45 -0.3
551,267 + -0.5
551,345 + +0.2
551,516 - BPHYT_RS22260 0.68 -0.9
551,606 + +0.9
551,607 - +0.1
551,623 + -0.3
551,715 - +0.5
551,768 - +2.1
551,768 - +0.5

Or see this region's nucleotide sequence