Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21750 and BPHYT_RS21755 are separated by 119 nucleotides BPHYT_RS21755 and BPHYT_RS21760 overlap by 1 nucleotides BPHYT_RS21760 and BPHYT_RS21765 are separated by 132 nucleotides BPHYT_RS21765 and BPHYT_RS21770 are separated by 204 nucleotides
BPHYT_RS21750: BPHYT_RS21750 - major facilitator transporter, at 436,696 to 438,006
_RS21750
BPHYT_RS21755: BPHYT_RS21755 - twitching motility protein PilT, at 438,126 to 438,503
_RS21755
BPHYT_RS21760: BPHYT_RS21760 - antitoxin, at 438,503 to 438,733
_RS21760
BPHYT_RS21765: BPHYT_RS21765 - IclR family transcriptional regulator, at 438,866 to 439,630
_RS21765
BPHYT_RS21770: BPHYT_RS21770 - aldehyde dehydrogenase, at 439,835 to 441,280
_RS21770
Position (kb) 438
439
440 Strain fitness (log2 ratio) -1
0
1 at 438.128 kb on - strand at 438.151 kb on + strand at 438.480 kb on - strand at 438.480 kb on - strand at 438.540 kb on - strand, within BPHYT_RS21760 at 438.832 kb on - strand at 438.841 kb on + strand at 439.344 kb on - strand, within BPHYT_RS21765 at 439.650 kb on - strand at 439.796 kb on + strand at 439.813 kb on + strand at 440.091 kb on - strand, within BPHYT_RS21770
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 438,128 - -0.7 438,151 + -0.0 438,480 - +0.1 438,480 - -0.4 438,540 - BPHYT_RS21760 0.16 -0.4 438,832 - +0.2 438,841 + +0.1 439,344 - BPHYT_RS21765 0.62 -1.2 439,650 - -1.0 439,796 + -0.7 439,813 + -1.2 440,091 - BPHYT_RS21770 0.18 +0.5
Or see this region's nucleotide sequence