Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21145

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21140 and BPHYT_RS21145 are separated by 143 nucleotidesBPHYT_RS21145 and BPHYT_RS21150 are separated by 67 nucleotides BPHYT_RS21140: BPHYT_RS21140 - methylenetetrahydromethanopterin reductase, at 303,260 to 304,261 _RS21140 BPHYT_RS21145: BPHYT_RS21145 - allantoate amidohydrolase, at 304,405 to 305,643 _RS21145 BPHYT_RS21150: BPHYT_RS21150 - NAD(P) transhydrogenase subunit alpha, at 305,711 to 306,829 _RS21150 Position (kb) 304 305 306Strain fitness (log2 ratio) -1 0 1 2at 303.975 kb on - strand, within BPHYT_RS21140at 304.038 kb on - strand, within BPHYT_RS21140at 304.190 kb on + strandat 304.773 kb on + strand, within BPHYT_RS21145at 305.724 kb on + strandat 305.786 kb on + strandat 305.858 kb on + strand, within BPHYT_RS21150at 305.859 kb on - strand, within BPHYT_RS21150at 306.122 kb on + strand, within BPHYT_RS21150at 306.123 kb on - strand, within BPHYT_RS21150

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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303,975 - BPHYT_RS21140 0.71 +0.5
304,038 - BPHYT_RS21140 0.78 +1.1
304,190 + -0.7
304,773 + BPHYT_RS21145 0.30 -0.2
305,724 + +1.8
305,786 + +0.6
305,858 + BPHYT_RS21150 0.13 +0.3
305,859 - BPHYT_RS21150 0.13 +0.7
306,122 + BPHYT_RS21150 0.37 +1.2
306,123 - BPHYT_RS21150 0.37 -0.0

Or see this region's nucleotide sequence