Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16290

Experiment: Uridine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS16285 and BPHYT_RS16290 are separated by 62 nucleotidesBPHYT_RS16290 and BPHYT_RS16295 are separated by 169 nucleotides BPHYT_RS16285: BPHYT_RS16285 - Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data), at 3,697,139 to 3,698,062 _RS16285 BPHYT_RS16290: BPHYT_RS16290 - hypothetical protein, at 3,698,125 to 3,698,319 _RS16290 BPHYT_RS16295: BPHYT_RS16295 - ADP-heptose--LPS heptosyltransferase, at 3,698,489 to 3,699,514 _RS16295 Position (kb) 3698 3699Strain fitness (log2 ratio) -1 0 1 2at 3697.138 kb on + strandat 3697.138 kb on + strandat 3697.430 kb on + strand, within BPHYT_RS16285at 3697.430 kb on + strand, within BPHYT_RS16285at 3697.431 kb on - strand, within BPHYT_RS16285at 3697.529 kb on + strand, within BPHYT_RS16285at 3697.529 kb on + strand, within BPHYT_RS16285at 3697.880 kb on + strand, within BPHYT_RS16285at 3697.880 kb on + strand, within BPHYT_RS16285at 3698.108 kb on + strandat 3698.108 kb on + strandat 3698.281 kb on + strandat 3698.281 kb on + strand, within BPHYT_RS16290at 3698.387 kb on + strandat 3698.416 kb on + strandat 3698.444 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
remove
3,697,138 + +0.3
3,697,138 + +0.7
3,697,430 + BPHYT_RS16285 0.31 -0.9
3,697,430 + BPHYT_RS16285 0.31 -1.0
3,697,431 - BPHYT_RS16285 0.32 -0.1
3,697,529 + BPHYT_RS16285 0.42 -0.3
3,697,529 + BPHYT_RS16285 0.42 -0.4
3,697,880 + BPHYT_RS16285 0.80 +0.1
3,697,880 + BPHYT_RS16285 0.80 +0.1
3,698,108 + -0.5
3,698,108 + -0.2
3,698,281 + +2.6
3,698,281 + BPHYT_RS16290 0.80 -1.7
3,698,387 + -0.9
3,698,416 + +0.3
3,698,444 + +0.1

Or see this region's nucleotide sequence