Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15010

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15005 and BPHYT_RS15010 are separated by 147 nucleotidesBPHYT_RS15010 and BPHYT_RS15015 overlap by 4 nucleotidesBPHYT_RS15015 and BPHYT_RS15020 are separated by 137 nucleotides BPHYT_RS15005: BPHYT_RS15005 - FAD-binding monooxygenase, at 3,411,544 to 3,413,268 _RS15005 BPHYT_RS15010: BPHYT_RS15010 - cation transporter, at 3,413,416 to 3,414,516 _RS15010 BPHYT_RS15015: BPHYT_RS15015 - ArsR family transcriptional regulator, at 3,414,513 to 3,414,872 _RS15015 BPHYT_RS15020: BPHYT_RS15020 - tetratricopeptide repeat protein, at 3,415,010 to 3,416,857 _RS15020 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -3 -2 -1 0 1at 3412.654 kb on - strand, within BPHYT_RS15005at 3412.791 kb on - strand, within BPHYT_RS15005at 3413.297 kb on + strandat 3413.297 kb on + strandat 3413.298 kb on - strandat 3413.302 kb on + strandat 3413.303 kb on - strandat 3413.515 kb on + strandat 3413.803 kb on - strand, within BPHYT_RS15010at 3413.803 kb on - strand, within BPHYT_RS15010at 3413.804 kb on + strand, within BPHYT_RS15010at 3413.862 kb on + strand, within BPHYT_RS15010at 3413.863 kb on - strand, within BPHYT_RS15010at 3414.100 kb on - strand, within BPHYT_RS15010at 3414.679 kb on - strand, within BPHYT_RS15015at 3414.852 kb on - strandat 3414.921 kb on - strandat 3415.020 kb on + strandat 3415.020 kb on + strandat 3415.020 kb on + strandat 3415.328 kb on + strand, within BPHYT_RS15020at 3415.329 kb on - strand, within BPHYT_RS15020at 3415.346 kb on + strand, within BPHYT_RS15020

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,412,654 - BPHYT_RS15005 0.64 +0.3
3,412,791 - BPHYT_RS15005 0.72 +0.6
3,413,297 + -0.4
3,413,297 + +0.5
3,413,298 - -0.3
3,413,302 + -0.2
3,413,303 - +0.3
3,413,515 + -0.0
3,413,803 - BPHYT_RS15010 0.35 -1.5
3,413,803 - BPHYT_RS15010 0.35 -1.2
3,413,804 + BPHYT_RS15010 0.35 -1.1
3,413,862 + BPHYT_RS15010 0.41 -0.4
3,413,863 - BPHYT_RS15010 0.41 -1.1
3,414,100 - BPHYT_RS15010 0.62 -3.5
3,414,679 - BPHYT_RS15015 0.46 +0.4
3,414,852 - +0.5
3,414,921 - +0.2
3,415,020 + +0.9
3,415,020 + +0.7
3,415,020 + -0.5
3,415,328 + BPHYT_RS15020 0.17 +0.2
3,415,329 - BPHYT_RS15020 0.17 -0.1
3,415,346 + BPHYT_RS15020 0.18 -0.0

Or see this region's nucleotide sequence