Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15005 and BPHYT_RS15010 are separated by 147 nucleotides BPHYT_RS15010 and BPHYT_RS15015 overlap by 4 nucleotides BPHYT_RS15015 and BPHYT_RS15020 are separated by 137 nucleotides
BPHYT_RS15005: BPHYT_RS15005 - FAD-binding monooxygenase, at 3,411,544 to 3,413,268
_RS15005
BPHYT_RS15010: BPHYT_RS15010 - cation transporter, at 3,413,416 to 3,414,516
_RS15010
BPHYT_RS15015: BPHYT_RS15015 - ArsR family transcriptional regulator, at 3,414,513 to 3,414,872
_RS15015
BPHYT_RS15020: BPHYT_RS15020 - tetratricopeptide repeat protein, at 3,415,010 to 3,416,857
_RS15020
Position (kb)
3413
3414
3415 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3412.654 kb on - strand, within BPHYT_RS15005 at 3412.791 kb on - strand, within BPHYT_RS15005 at 3413.297 kb on + strand at 3413.297 kb on + strand at 3413.298 kb on - strand at 3413.302 kb on + strand at 3413.303 kb on - strand at 3413.515 kb on + strand at 3413.803 kb on - strand, within BPHYT_RS15010 at 3413.803 kb on - strand, within BPHYT_RS15010 at 3413.804 kb on + strand, within BPHYT_RS15010 at 3413.862 kb on + strand, within BPHYT_RS15010 at 3413.863 kb on - strand, within BPHYT_RS15010 at 3414.100 kb on - strand, within BPHYT_RS15010 at 3414.679 kb on - strand, within BPHYT_RS15015 at 3414.852 kb on - strand at 3414.921 kb on - strand at 3415.020 kb on + strand at 3415.020 kb on + strand at 3415.020 kb on + strand at 3415.328 kb on + strand, within BPHYT_RS15020 at 3415.329 kb on - strand, within BPHYT_RS15020 at 3415.346 kb on + strand, within BPHYT_RS15020
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,412,654 - BPHYT_RS15005 0.64 +0.3 3,412,791 - BPHYT_RS15005 0.72 +0.6 3,413,297 + -0.4 3,413,297 + +0.5 3,413,298 - -0.3 3,413,302 + -0.2 3,413,303 - +0.3 3,413,515 + -0.0 3,413,803 - BPHYT_RS15010 0.35 -1.5 3,413,803 - BPHYT_RS15010 0.35 -1.2 3,413,804 + BPHYT_RS15010 0.35 -1.1 3,413,862 + BPHYT_RS15010 0.41 -0.4 3,413,863 - BPHYT_RS15010 0.41 -1.1 3,414,100 - BPHYT_RS15010 0.62 -3.5 3,414,679 - BPHYT_RS15015 0.46 +0.4 3,414,852 - +0.5 3,414,921 - +0.2 3,415,020 + +0.9 3,415,020 + +0.7 3,415,020 + -0.5 3,415,328 + BPHYT_RS15020 0.17 +0.2 3,415,329 - BPHYT_RS15020 0.17 -0.1 3,415,346 + BPHYT_RS15020 0.18 -0.0
Or see this region's nucleotide sequence