Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08470

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08465 and BPHYT_RS08470 are separated by 472 nucleotidesBPHYT_RS08470 and BPHYT_RS08475 are separated by 197 nucleotidesBPHYT_RS08475 and BPHYT_RS08480 overlap by 4 nucleotides BPHYT_RS08465: BPHYT_RS08465 - ribose-5-phosphate isomerase A, at 1,936,465 to 1,937,160 _RS08465 BPHYT_RS08470: BPHYT_RS08470 - glycosyl transferase, at 1,937,633 to 1,938,829 _RS08470 BPHYT_RS08475: BPHYT_RS08475 - hypothetical protein, at 1,939,027 to 1,939,326 _RS08475 BPHYT_RS08480: BPHYT_RS08480 - transcriptional regulator, at 1,939,323 to 1,939,745 _RS08480 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1937.271 kb on - strandat 1937.284 kb on - strandat 1937.284 kb on - strandat 1937.584 kb on + strandat 1937.584 kb on + strandat 1937.584 kb on + strandat 1937.585 kb on - strandat 1937.759 kb on - strand, within BPHYT_RS08470at 1937.834 kb on + strand, within BPHYT_RS08470at 1937.883 kb on - strand, within BPHYT_RS08470at 1937.894 kb on - strand, within BPHYT_RS08470at 1937.897 kb on - strand, within BPHYT_RS08470at 1937.950 kb on + strand, within BPHYT_RS08470at 1938.899 kb on + strandat 1938.907 kb on + strandat 1939.139 kb on - strand, within BPHYT_RS08475at 1939.174 kb on + strand, within BPHYT_RS08475at 1939.174 kb on + strand, within BPHYT_RS08475at 1939.189 kb on + strand, within BPHYT_RS08475at 1939.243 kb on + strand, within BPHYT_RS08475at 1939.244 kb on - strand, within BPHYT_RS08475at 1939.275 kb on - strand, within BPHYT_RS08475at 1939.291 kb on + strand, within BPHYT_RS08475at 1939.426 kb on - strand, within BPHYT_RS08480at 1939.627 kb on + strand, within BPHYT_RS08480

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,937,271 - +0.1
1,937,284 - -4.3
1,937,284 - +0.1
1,937,584 + -1.7
1,937,584 + +0.5
1,937,584 + -0.2
1,937,585 - +0.4
1,937,759 - BPHYT_RS08470 0.11 +0.1
1,937,834 + BPHYT_RS08470 0.17 -1.2
1,937,883 - BPHYT_RS08470 0.21 -0.2
1,937,894 - BPHYT_RS08470 0.22 -1.4
1,937,897 - BPHYT_RS08470 0.22 -1.5
1,937,950 + BPHYT_RS08470 0.26 -0.9
1,938,899 + -0.8
1,938,907 + +0.1
1,939,139 - BPHYT_RS08475 0.37 -5.4
1,939,174 + BPHYT_RS08475 0.49 -0.4
1,939,174 + BPHYT_RS08475 0.49 -0.1
1,939,189 + BPHYT_RS08475 0.54 -1.2
1,939,243 + BPHYT_RS08475 0.72 +0.9
1,939,244 - BPHYT_RS08475 0.72 -0.2
1,939,275 - BPHYT_RS08475 0.83 -2.4
1,939,291 + BPHYT_RS08475 0.88 -0.5
1,939,426 - BPHYT_RS08480 0.24 +0.3
1,939,627 + BPHYT_RS08480 0.72 -2.1

Or see this region's nucleotide sequence