Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07325

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07320 and BPHYT_RS07325 are separated by 50 nucleotidesBPHYT_RS07325 and BPHYT_RS07330 are separated by 276 nucleotides BPHYT_RS07320: BPHYT_RS07320 - dihydrodipicolinate synthetase, at 1,660,655 to 1,661,563 _RS07320 BPHYT_RS07325: BPHYT_RS07325 - GntR family transcriptional regulator, at 1,661,614 to 1,662,273 _RS07325 BPHYT_RS07330: BPHYT_RS07330 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 1,662,550 to 1,663,470 _RS07330 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -2 -1 0 1at 1660.616 kb on - strandat 1661.408 kb on - strand, within BPHYT_RS07320at 1661.907 kb on - strand, within BPHYT_RS07325at 1662.361 kb on - strandat 1662.476 kb on + strandat 1662.908 kb on - strand, within BPHYT_RS07330at 1662.908 kb on - strand, within BPHYT_RS07330at 1662.908 kb on - strand, within BPHYT_RS07330at 1662.957 kb on - strand, within BPHYT_RS07330at 1663.270 kb on - strand, within BPHYT_RS07330at 1663.270 kb on - strand, within BPHYT_RS07330at 1663.270 kb on - strand, within BPHYT_RS07330

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,660,616 - +0.0
1,661,408 - BPHYT_RS07320 0.83 +1.0
1,661,907 - BPHYT_RS07325 0.44 -2.4
1,662,361 - -0.8
1,662,476 + +1.5
1,662,908 - BPHYT_RS07330 0.39 +1.1
1,662,908 - BPHYT_RS07330 0.39 -0.8
1,662,908 - BPHYT_RS07330 0.39 -0.2
1,662,957 - BPHYT_RS07330 0.44 -0.2
1,663,270 - BPHYT_RS07330 0.78 -0.8
1,663,270 - BPHYT_RS07330 0.78 +1.5
1,663,270 - BPHYT_RS07330 0.78 -1.1

Or see this region's nucleotide sequence