Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01430

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01425 and BPHYT_RS01430 are separated by 376 nucleotidesBPHYT_RS01430 and BPHYT_RS01435 are separated by 340 nucleotides BPHYT_RS01425: BPHYT_RS01425 - 3-phosphoglycerate dehydrogenase, at 323,468 to 324,481 _RS01425 BPHYT_RS01430: BPHYT_RS01430 - phosphoenolpyruvate carboxykinase, at 324,858 to 326,714 _RS01430 BPHYT_RS01435: BPHYT_RS01435 - LysR family transcriptional regulator, at 327,055 to 328,158 _RS01435 Position (kb) 324 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.030 kb on - strand, within BPHYT_RS01425at 324.100 kb on + strand, within BPHYT_RS01425at 324.175 kb on - strand, within BPHYT_RS01425at 324.206 kb on - strand, within BPHYT_RS01425at 324.484 kb on + strandat 324.484 kb on + strandat 324.484 kb on + strandat 324.485 kb on - strandat 324.485 kb on - strandat 324.485 kb on - strandat 324.527 kb on - strandat 324.553 kb on - strandat 324.588 kb on - strandat 324.591 kb on - strandat 324.591 kb on - strandat 324.595 kb on - strandat 324.643 kb on - strandat 324.676 kb on - strandat 324.831 kb on - strandat 325.002 kb on + strandat 325.078 kb on - strand, within BPHYT_RS01430at 325.169 kb on + strand, within BPHYT_RS01430at 325.169 kb on + strand, within BPHYT_RS01430at 325.169 kb on + strand, within BPHYT_RS01430at 325.170 kb on - strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.245 kb on + strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.246 kb on - strand, within BPHYT_RS01430at 325.320 kb on + strand, within BPHYT_RS01430at 325.320 kb on + strand, within BPHYT_RS01430at 325.321 kb on - strand, within BPHYT_RS01430at 325.376 kb on - strand, within BPHYT_RS01430at 325.376 kb on - strand, within BPHYT_RS01430at 325.476 kb on + strand, within BPHYT_RS01430at 325.476 kb on + strand, within BPHYT_RS01430at 325.477 kb on - strand, within BPHYT_RS01430at 325.477 kb on - strand, within BPHYT_RS01430at 325.477 kb on - strand, within BPHYT_RS01430at 325.477 kb on - strand, within BPHYT_RS01430at 325.477 kb on - strand, within BPHYT_RS01430at 325.515 kb on + strand, within BPHYT_RS01430at 325.516 kb on - strand, within BPHYT_RS01430at 325.516 kb on - strand, within BPHYT_RS01430at 325.528 kb on - strand, within BPHYT_RS01430at 325.763 kb on + strand, within BPHYT_RS01430at 325.824 kb on + strand, within BPHYT_RS01430at 325.825 kb on - strand, within BPHYT_RS01430at 326.199 kb on + strand, within BPHYT_RS01430at 326.199 kb on + strand, within BPHYT_RS01430at 326.199 kb on + strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.313 kb on + strand, within BPHYT_RS01430at 326.313 kb on + strand, within BPHYT_RS01430at 326.526 kb on + strand, within BPHYT_RS01430at 326.527 kb on - strand, within BPHYT_RS01430at 326.762 kb on + strandat 326.763 kb on - strandat 326.908 kb on + strandat 326.938 kb on + strandat 326.938 kb on + strandat 326.938 kb on + strandat 326.939 kb on - strandat 326.939 kb on - strandat 326.939 kb on - strandat 326.982 kb on + strandat 326.982 kb on + strandat 326.983 kb on - strandat 326.983 kb on - strandat 327.035 kb on - strandat 327.035 kb on - strandat 327.035 kb on - strandat 327.135 kb on + strandat 327.135 kb on + strandat 327.136 kb on - strandat 327.136 kb on - strandat 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.189 kb on + strand, within BPHYT_RS01435at 327.189 kb on + strand, within BPHYT_RS01435at 327.190 kb on - strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.395 kb on - strand, within BPHYT_RS01435at 327.395 kb on - strand, within BPHYT_RS01435at 327.395 kb on - strandat 327.513 kb on + strandat 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.568 kb on + strand, within BPHYT_RS01435at 327.643 kb on + strand, within BPHYT_RS01435at 327.643 kb on + strand, within BPHYT_RS01435

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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324,030 - BPHYT_RS01425 0.55 +1.0
324,100 + BPHYT_RS01425 0.62 -3.3
324,175 - BPHYT_RS01425 0.70 +0.5
324,206 - BPHYT_RS01425 0.73 +0.5
324,484 + -0.6
324,484 + -0.0
324,484 + -2.2
324,485 - -0.3
324,485 - +0.5
324,485 - -0.2
324,527 - +0.7
324,553 - -0.0
324,588 - -0.8
324,591 - +0.1
324,591 - +0.4
324,595 - +0.3
324,643 - +0.0
324,676 - -0.5
324,831 - -0.4
325,002 + -1.0
325,078 - BPHYT_RS01430 0.12 +0.3
325,169 + BPHYT_RS01430 0.17 +0.1
325,169 + BPHYT_RS01430 0.17 -0.4
325,169 + BPHYT_RS01430 0.17 -1.3
325,170 - BPHYT_RS01430 0.17 +0.1
325,245 + BPHYT_RS01430 0.21 +0.0
325,245 + BPHYT_RS01430 0.21 +0.1
325,245 + BPHYT_RS01430 0.21 -0.6
325,245 + BPHYT_RS01430 0.21 +0.4
325,245 + BPHYT_RS01430 0.21 +0.9
325,245 + BPHYT_RS01430 0.21 -0.1
325,245 + BPHYT_RS01430 0.21 -0.6
325,245 + BPHYT_RS01430 0.21 -0.3
325,246 - BPHYT_RS01430 0.21 -0.2
325,246 - BPHYT_RS01430 0.21 -1.7
325,246 - BPHYT_RS01430 0.21 +0.1
325,246 - BPHYT_RS01430 0.21 +0.1
325,246 - BPHYT_RS01430 0.21 +1.7
325,246 - BPHYT_RS01430 0.21 +0.3
325,246 - BPHYT_RS01430 0.21 -0.4
325,246 - BPHYT_RS01430 0.21 -1.6
325,246 - BPHYT_RS01430 0.21 +0.5
325,246 - BPHYT_RS01430 0.21 +0.2
325,246 - BPHYT_RS01430 0.21 -0.4
325,246 - BPHYT_RS01430 0.21 +0.1
325,320 + BPHYT_RS01430 0.25 +0.7
325,320 + BPHYT_RS01430 0.25 +3.1
325,321 - BPHYT_RS01430 0.25 +0.6
325,376 - BPHYT_RS01430 0.28 -1.6
325,376 - BPHYT_RS01430 0.28 -0.2
325,476 + BPHYT_RS01430 0.33 +0.8
325,476 + BPHYT_RS01430 0.33 +0.1
325,477 - BPHYT_RS01430 0.33 -0.3
325,477 - BPHYT_RS01430 0.33 -2.5
325,477 - BPHYT_RS01430 0.33 +0.2
325,477 - BPHYT_RS01430 0.33 +0.0
325,477 - BPHYT_RS01430 0.33 +0.1
325,515 + BPHYT_RS01430 0.35 +0.5
325,516 - BPHYT_RS01430 0.35 +0.1
325,516 - BPHYT_RS01430 0.35 -0.1
325,528 - BPHYT_RS01430 0.36 -1.7
325,763 + BPHYT_RS01430 0.49 +0.3
325,824 + BPHYT_RS01430 0.52 +1.1
325,825 - BPHYT_RS01430 0.52 +0.6
326,199 + BPHYT_RS01430 0.72 +0.4
326,199 + BPHYT_RS01430 0.72 +1.4
326,199 + BPHYT_RS01430 0.72 +0.3
326,200 - BPHYT_RS01430 0.72 +0.2
326,200 - BPHYT_RS01430 0.72 +0.0
326,200 - BPHYT_RS01430 0.72 +0.5
326,200 - BPHYT_RS01430 0.72 -0.1
326,200 - BPHYT_RS01430 0.72 +0.2
326,313 + BPHYT_RS01430 0.78 -0.1
326,313 + BPHYT_RS01430 0.78 +0.2
326,526 + BPHYT_RS01430 0.90 -0.4
326,527 - BPHYT_RS01430 0.90 +1.0
326,762 + +0.3
326,763 - -1.6
326,908 + -0.1
326,938 + +0.4
326,938 + +1.2
326,938 + -0.7
326,939 - +1.0
326,939 - +0.1
326,939 - +0.4
326,982 + -0.1
326,982 + -0.1
326,983 - +0.4
326,983 - +0.0
327,035 - +0.2
327,035 - +0.3
327,035 - -0.7
327,135 + +0.4
327,135 + -0.0
327,136 - -0.0
327,136 - +0.1
327,185 + BPHYT_RS01435 0.12 +0.3
327,185 + BPHYT_RS01435 0.12 -0.4
327,185 + BPHYT_RS01435 0.12 +0.5
327,185 + BPHYT_RS01435 0.12 +0.3
327,185 + BPHYT_RS01435 0.12 +0.9
327,185 + BPHYT_RS01435 0.12 +1.0
327,185 + BPHYT_RS01435 0.12 +0.6
327,185 + BPHYT_RS01435 0.12 +0.2
327,186 - BPHYT_RS01435 0.12 +2.1
327,186 - BPHYT_RS01435 0.12 +0.4
327,186 - BPHYT_RS01435 0.12 +0.3
327,189 + BPHYT_RS01435 0.12 +0.3
327,189 + BPHYT_RS01435 0.12 +0.3
327,190 - BPHYT_RS01435 0.12 +0.5
327,247 + BPHYT_RS01435 0.17 +0.5
327,247 + BPHYT_RS01435 0.17 -0.3
327,247 + BPHYT_RS01435 0.17 +0.5
327,247 + BPHYT_RS01435 0.17 +0.4
327,394 + BPHYT_RS01435 0.31 +1.4
327,394 + BPHYT_RS01435 0.31 +0.4
327,394 + BPHYT_RS01435 0.31 +0.4
327,395 - BPHYT_RS01435 0.31 -1.3
327,395 - BPHYT_RS01435 0.31 +0.3
327,395 - +1.7
327,513 + +1.7
327,513 + BPHYT_RS01435 0.41 -1.3
327,513 + BPHYT_RS01435 0.41 +0.3
327,513 + BPHYT_RS01435 0.41 +0.3
327,513 + BPHYT_RS01435 0.41 +0.4
327,514 - BPHYT_RS01435 0.42 +0.7
327,514 - BPHYT_RS01435 0.42 +1.5
327,514 - BPHYT_RS01435 0.42 +0.7
327,568 + BPHYT_RS01435 0.46 +0.5
327,643 + BPHYT_RS01435 0.53 -0.0
327,643 + BPHYT_RS01435 0.53 +0.4

Or see this region's nucleotide sequence