Experiment: Cobalt chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4894 and Ac3H11_4895 overlap by 36 nucleotides Ac3H11_4895 and Ac3H11_4896 are separated by 37 nucleotides Ac3H11_4896 and Ac3H11_4897 are separated by 197 nucleotides Ac3H11_4897 and Ac3H11_4898 are separated by 176 nucleotides Ac3H11_4898 and Ac3H11_4899 are separated by 140 nucleotides
Ac3H11_4894 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 61,844 to 62,998
_4894
Ac3H11_4895 - hypothetical protein, at 62,963 to 63,136
_4895
Ac3H11_4896 - uncharacterized domain 1, at 63,174 to 63,596
_4896
Ac3H11_4897 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 63,794 to 64,429
_4897
Ac3H11_4898 - Calcium-binding EF-hand-containing protein, at 64,606 to 64,935
_4898
Ac3H11_4899 - ABC transporter ATP-binding protein, at 65,076 to 65,870
_4899
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 63.001 kb on + strand, within Ac3H11_4895 at 63.001 kb on + strand, within Ac3H11_4895 at 63.001 kb on + strand, within Ac3H11_4895 at 63.001 kb on + strand, within Ac3H11_4895 at 63.002 kb on - strand, within Ac3H11_4895 at 63.002 kb on - strand, within Ac3H11_4895 at 63.002 kb on - strand, within Ac3H11_4895 at 63.111 kb on + strand, within Ac3H11_4895 at 63.111 kb on + strand, within Ac3H11_4895 at 63.111 kb on + strand, within Ac3H11_4895 at 63.111 kb on + strand, within Ac3H11_4895 at 63.111 kb on + strand, within Ac3H11_4895 at 63.111 kb on + strand, within Ac3H11_4895 at 63.112 kb on - strand, within Ac3H11_4895 at 63.112 kb on - strand, within Ac3H11_4895 at 63.112 kb on - strand, within Ac3H11_4895 at 63.112 kb on - strand, within Ac3H11_4895 at 63.112 kb on - strand, within Ac3H11_4895 at 63.134 kb on + strand at 63.135 kb on - strand at 63.135 kb on - strand at 63.135 kb on - strand at 63.135 kb on - strand at 63.148 kb on + strand at 63.238 kb on + strand at 63.238 kb on + strand, within Ac3H11_4896 at 63.388 kb on - strand, within Ac3H11_4896 at 63.388 kb on - strand, within Ac3H11_4896 at 63.388 kb on - strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.390 kb on + strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.391 kb on - strand, within Ac3H11_4896 at 63.639 kb on + strand at 63.646 kb on + strand at 63.646 kb on + strand at 63.787 kb on + strand at 63.787 kb on + strand at 63.791 kb on + strand at 63.791 kb on + strand at 63.791 kb on + strand at 63.912 kb on + strand, within Ac3H11_4897 at 63.912 kb on + strand, within Ac3H11_4897 at 63.913 kb on - strand, within Ac3H11_4897 at 64.386 kb on - strand at 64.386 kb on - strand at 64.493 kb on + strand at 64.493 kb on + strand at 64.493 kb on + strand at 64.493 kb on + strand at 64.494 kb on - strand at 64.494 kb on - strand at 64.631 kb on - strand at 64.631 kb on - strand at 64.631 kb on - strand at 64.735 kb on + strand, within Ac3H11_4898 at 64.735 kb on + strand, within Ac3H11_4898 at 64.735 kb on + strand, within Ac3H11_4898 at 64.736 kb on - strand, within Ac3H11_4898 at 64.736 kb on - strand, within Ac3H11_4898 at 64.741 kb on + strand, within Ac3H11_4898 at 64.997 kb on + strand at 64.997 kb on + strand at 64.998 kb on - strand at 65.364 kb on - strand, within Ac3H11_4899
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM remove 63,001 + Ac3H11_4895 0.22 +0.9 63,001 + Ac3H11_4895 0.22 +1.1 63,001 + Ac3H11_4895 0.22 -2.2 63,001 + Ac3H11_4895 0.22 -0.7 63,002 - Ac3H11_4895 0.22 +1.5 63,002 - Ac3H11_4895 0.22 +0.8 63,002 - Ac3H11_4895 0.22 -0.2 63,111 + Ac3H11_4895 0.85 +0.8 63,111 + Ac3H11_4895 0.85 -0.2 63,111 + Ac3H11_4895 0.85 -0.4 63,111 + Ac3H11_4895 0.85 +0.3 63,111 + Ac3H11_4895 0.85 -0.5 63,111 + Ac3H11_4895 0.85 +0.0 63,112 - Ac3H11_4895 0.86 +4.2 63,112 - Ac3H11_4895 0.86 -1.9 63,112 - Ac3H11_4895 0.86 +0.8 63,112 - Ac3H11_4895 0.86 -0.1 63,112 - Ac3H11_4895 0.86 +0.4 63,134 + -1.5 63,135 - +0.8 63,135 - +0.0 63,135 - -0.3 63,135 - -1.3 63,148 + +1.0 63,238 + +2.2 63,238 + Ac3H11_4896 0.15 -0.0 63,388 - Ac3H11_4896 0.51 +0.8 63,388 - Ac3H11_4896 0.51 -1.2 63,388 - Ac3H11_4896 0.51 -0.5 63,390 + Ac3H11_4896 0.51 -0.5 63,390 + Ac3H11_4896 0.51 -0.1 63,390 + Ac3H11_4896 0.51 -0.2 63,390 + Ac3H11_4896 0.51 +0.9 63,390 + Ac3H11_4896 0.51 +1.5 63,390 + Ac3H11_4896 0.51 -0.4 63,390 + Ac3H11_4896 0.51 +0.6 63,390 + Ac3H11_4896 0.51 -1.2 63,391 - Ac3H11_4896 0.51 -0.5 63,391 - Ac3H11_4896 0.51 -0.6 63,391 - Ac3H11_4896 0.51 -1.1 63,391 - Ac3H11_4896 0.51 -0.0 63,391 - Ac3H11_4896 0.51 +0.5 63,391 - Ac3H11_4896 0.51 -0.4 63,391 - Ac3H11_4896 0.51 -0.9 63,391 - Ac3H11_4896 0.51 -0.2 63,639 + +1.3 63,646 + +0.5 63,646 + -0.7 63,787 + -0.2 63,787 + -1.1 63,791 + -1.1 63,791 + -0.8 63,791 + -0.7 63,912 + Ac3H11_4897 0.19 +0.1 63,912 + Ac3H11_4897 0.19 -0.4 63,913 - Ac3H11_4897 0.19 +0.9 64,386 - -0.5 64,386 - +0.1 64,493 + -2.2 64,493 + +0.2 64,493 + +0.7 64,493 + +0.2 64,494 - -0.6 64,494 - -0.0 64,631 - -1.1 64,631 - +0.3 64,631 - -0.5 64,735 + Ac3H11_4898 0.39 -0.6 64,735 + Ac3H11_4898 0.39 -1.2 64,735 + Ac3H11_4898 0.39 -0.1 64,736 - Ac3H11_4898 0.39 -0.5 64,736 - Ac3H11_4898 0.39 -2.0 64,741 + Ac3H11_4898 0.41 -1.0 64,997 + -2.4 64,997 + -1.2 64,998 - +0.9 65,364 - Ac3H11_4899 0.36 -0.7
Or see this region's nucleotide sequence