Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3805

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3804 and Ac3H11_3805 overlap by 4 nucleotidesAc3H11_3805 and Ac3H11_3806 overlap by 41 nucleotidesAc3H11_3806 and Ac3H11_3807 overlap by 8 nucleotides Ac3H11_3804 - Putative formate dehydrogenase-specific chaperone, at 16,826 to 17,461 _3804 Ac3H11_3805 - Iron-sulfur cluster-binding protein, at 17,458 to 19,527 _3805 Ac3H11_3806 - FIG00433900: hypothetical protein, at 19,487 to 20,203 _3806 Ac3H11_3807 - FIG00431662: hypothetical protein, at 20,196 to 20,756 _3807 Position (kb) 17 18 19 20Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 16.488 kb on + strandat 16.488 kb on + strandat 16.488 kb on + strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.489 kb on - strandat 16.491 kb on + strandat 16.491 kb on + strandat 16.491 kb on + strandat 16.491 kb on + strandat 16.492 kb on - strandat 16.492 kb on - strandat 16.519 kb on - strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.580 kb on + strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.581 kb on - strandat 16.704 kb on + strandat 16.704 kb on + strandat 16.705 kb on - strandat 16.720 kb on + strandat 16.720 kb on + strandat 16.721 kb on - strandat 16.721 kb on - strandat 16.721 kb on - strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.727 kb on + strandat 16.728 kb on - strandat 16.728 kb on - strandat 16.739 kb on + strandat 16.739 kb on + strandat 16.773 kb on - strandat 16.790 kb on + strandat 16.827 kb on + strandat 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.896 kb on + strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 16.897 kb on - strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.025 kb on + strand, within Ac3H11_3804at 17.026 kb on - strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.046 kb on + strand, within Ac3H11_3804at 17.157 kb on + strand, within Ac3H11_3804at 17.157 kb on + strand, within Ac3H11_3804at 17.169 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.358 kb on + strand, within Ac3H11_3804at 17.359 kb on - strand, within Ac3H11_3804at 17.359 kb on - strand, within Ac3H11_3804at 17.359 kb on - strand, within Ac3H11_3804at 17.361 kb on + strand, within Ac3H11_3804at 17.361 kb on + strand, within Ac3H11_3804at 17.361 kb on + strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.362 kb on - strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.382 kb on + strand, within Ac3H11_3804at 17.383 kb on - strand, within Ac3H11_3804at 17.383 kb on - strand, within Ac3H11_3804at 17.383 kb on - strand, within Ac3H11_3804at 17.495 kb on + strandat 17.495 kb on + strandat 17.496 kb on - strandat 18.113 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.173 kb on + strand, within Ac3H11_3805at 18.174 kb on - strand, within Ac3H11_3805at 18.225 kb on - strand, within Ac3H11_3805at 18.225 kb on - strand, within Ac3H11_3805at 18.386 kb on - strand, within Ac3H11_3805at 18.386 kb on - strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.413 kb on + strand, within Ac3H11_3805at 18.414 kb on - strand, within Ac3H11_3805at 18.414 kb on - strand, within Ac3H11_3805at 18.414 kb on - strand, within Ac3H11_3805at 18.465 kb on - strand, within Ac3H11_3805at 18.465 kb on - strand, within Ac3H11_3805at 18.470 kb on + strand, within Ac3H11_3805at 18.470 kb on + strand, within Ac3H11_3805at 18.470 kb on + strand, within Ac3H11_3805at 18.470 kb on + strand, within Ac3H11_3805at 18.470 kb on + strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.471 kb on - strand, within Ac3H11_3805at 18.650 kb on + strand, within Ac3H11_3805at 18.651 kb on - strand, within Ac3H11_3805at 18.737 kb on + strand, within Ac3H11_3805at 18.737 kb on + strand, within Ac3H11_3805at 18.737 kb on + strand, within Ac3H11_3805at 18.737 kb on + strand, within Ac3H11_3805at 18.737 kb on + strand, within Ac3H11_3805at 18.737 kb on + strand, within Ac3H11_3805at 18.738 kb on - strand, within Ac3H11_3805at 19.208 kb on + strand, within Ac3H11_3805at 19.208 kb on + strand, within Ac3H11_3805at 19.209 kb on - strand, within Ac3H11_3805at 19.209 kb on - strand, within Ac3H11_3805at 19.209 kb on - strand, within Ac3H11_3805at 19.642 kb on + strand, within Ac3H11_3806at 19.643 kb on - strand, within Ac3H11_3806at 19.643 kb on - strand, within Ac3H11_3806at 19.658 kb on + strand, within Ac3H11_3806at 19.731 kb on - strand, within Ac3H11_3806at 19.872 kb on + strand, within Ac3H11_3806at 19.873 kb on - strand, within Ac3H11_3806at 19.873 kb on - strand, within Ac3H11_3806at 19.873 kb on - strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 20.326 kb on + strand, within Ac3H11_3807at 20.327 kb on - strand, within Ac3H11_3807at 20.428 kb on + strand, within Ac3H11_3807at 20.428 kb on + strand, within Ac3H11_3807at 20.428 kb on + strand, within Ac3H11_3807at 20.429 kb on - strand, within Ac3H11_3807at 20.429 kb on - strand, within Ac3H11_3807at 20.429 kb on - strand, within Ac3H11_3807at 20.481 kb on - strand, within Ac3H11_3807at 20.481 kb on - strand, within Ac3H11_3807

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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16,488 + +0.3
16,488 + +1.1
16,488 + -0.7
16,489 - -0.5
16,489 - +0.4
16,489 - +0.3
16,489 - +1.2
16,489 - +0.0
16,489 - +0.2
16,491 + -1.0
16,491 + +0.1
16,491 + -1.0
16,491 + +1.7
16,492 - -0.5
16,492 - +0.5
16,519 - +0.0
16,580 + +0.0
16,580 + +0.9
16,580 + -0.5
16,580 + -0.4
16,580 + -0.1
16,580 + -0.4
16,580 + +2.0
16,580 + +0.5
16,580 + -0.2
16,580 + +0.0
16,581 - -0.2
16,581 - -1.1
16,581 - -0.3
16,581 - -0.3
16,581 - -0.3
16,581 - +1.1
16,581 - +0.2
16,581 - -0.5
16,581 - -0.1
16,581 - +1.0
16,581 - -0.5
16,581 - +0.1
16,704 + +0.6
16,704 + +0.4
16,705 - +0.2
16,720 + -2.0
16,720 + +0.3
16,721 - +2.0
16,721 - -0.7
16,721 - -0.1
16,727 + +0.8
16,727 + +1.1
16,727 + +0.7
16,727 + +2.2
16,727 + -0.8
16,728 - -0.8
16,728 - -0.8
16,739 + -0.6
16,739 + +0.6
16,773 - +1.2
16,790 + +0.9
16,827 + +1.0
16,896 + Ac3H11_3804 0.11 -0.4
16,896 + Ac3H11_3804 0.11 -1.4
16,896 + Ac3H11_3804 0.11 +0.9
16,896 + Ac3H11_3804 0.11 -0.8
16,896 + Ac3H11_3804 0.11 -0.8
16,896 + Ac3H11_3804 0.11 +0.9
16,896 + Ac3H11_3804 0.11 +2.2
16,896 + Ac3H11_3804 0.11 -1.2
16,897 - Ac3H11_3804 0.11 -0.3
16,897 - Ac3H11_3804 0.11 -0.8
16,897 - Ac3H11_3804 0.11 -0.8
16,897 - Ac3H11_3804 0.11 +0.0
17,025 + Ac3H11_3804 0.31 -0.0
17,025 + Ac3H11_3804 0.31 -0.9
17,025 + Ac3H11_3804 0.31 +0.3
17,025 + Ac3H11_3804 0.31 -0.3
17,026 - Ac3H11_3804 0.31 +0.1
17,046 + Ac3H11_3804 0.35 -2.1
17,046 + Ac3H11_3804 0.35 -0.8
17,046 + Ac3H11_3804 0.35 -2.2
17,046 + Ac3H11_3804 0.35 +0.5
17,157 + Ac3H11_3804 0.52 -0.4
17,157 + Ac3H11_3804 0.52 +0.6
17,169 + Ac3H11_3804 0.54 +1.5
17,358 + Ac3H11_3804 0.84 -0.5
17,358 + Ac3H11_3804 0.84 +0.6
17,358 + Ac3H11_3804 0.84 -0.2
17,358 + Ac3H11_3804 0.84 -1.6
17,358 + Ac3H11_3804 0.84 +0.5
17,358 + Ac3H11_3804 0.84 +0.1
17,359 - Ac3H11_3804 0.84 -1.1
17,359 - Ac3H11_3804 0.84 +0.7
17,359 - Ac3H11_3804 0.84 -0.4
17,361 + Ac3H11_3804 0.84 +0.8
17,361 + Ac3H11_3804 0.84 +0.0
17,361 + Ac3H11_3804 0.84 -1.1
17,362 - Ac3H11_3804 0.84 -0.3
17,362 - Ac3H11_3804 0.84 +0.5
17,362 - Ac3H11_3804 0.84 +0.8
17,362 - Ac3H11_3804 0.84 +2.1
17,362 - Ac3H11_3804 0.84 -1.0
17,362 - Ac3H11_3804 0.84 -0.3
17,362 - Ac3H11_3804 0.84 +0.1
17,382 + Ac3H11_3804 0.87 +0.6
17,382 + Ac3H11_3804 0.87 +0.7
17,382 + Ac3H11_3804 0.87 -0.0
17,382 + Ac3H11_3804 0.87 -1.2
17,382 + Ac3H11_3804 0.87 +0.3
17,383 - Ac3H11_3804 0.88 -0.0
17,383 - Ac3H11_3804 0.88 -0.4
17,383 - Ac3H11_3804 0.88 +0.6
17,495 + -0.3
17,495 + -0.6
17,496 - +0.5
18,113 + Ac3H11_3805 0.32 +1.9
18,173 + Ac3H11_3805 0.35 +0.6
18,173 + Ac3H11_3805 0.35 +0.1
18,173 + Ac3H11_3805 0.35 +1.0
18,173 + Ac3H11_3805 0.35 +0.5
18,174 - Ac3H11_3805 0.35 +1.8
18,225 - Ac3H11_3805 0.37 -0.2
18,225 - Ac3H11_3805 0.37 +2.4
18,386 - Ac3H11_3805 0.45 +0.9
18,386 - Ac3H11_3805 0.45 -1.3
18,413 + Ac3H11_3805 0.46 +0.6
18,413 + Ac3H11_3805 0.46 +1.0
18,413 + Ac3H11_3805 0.46 -0.7
18,413 + Ac3H11_3805 0.46 +0.4
18,413 + Ac3H11_3805 0.46 +0.2
18,414 - Ac3H11_3805 0.46 -0.7
18,414 - Ac3H11_3805 0.46 -0.5
18,414 - Ac3H11_3805 0.46 -0.3
18,465 - Ac3H11_3805 0.49 +0.8
18,465 - Ac3H11_3805 0.49 -1.0
18,470 + Ac3H11_3805 0.49 +0.9
18,470 + Ac3H11_3805 0.49 +2.4
18,470 + Ac3H11_3805 0.49 +0.2
18,470 + Ac3H11_3805 0.49 -1.5
18,470 + Ac3H11_3805 0.49 -0.3
18,471 - Ac3H11_3805 0.49 -0.2
18,471 - Ac3H11_3805 0.49 -0.6
18,471 - Ac3H11_3805 0.49 +1.2
18,471 - Ac3H11_3805 0.49 +0.3
18,471 - Ac3H11_3805 0.49 +0.1
18,471 - Ac3H11_3805 0.49 +0.4
18,471 - Ac3H11_3805 0.49 -0.9
18,471 - Ac3H11_3805 0.49 +0.5
18,471 - Ac3H11_3805 0.49 +0.2
18,471 - Ac3H11_3805 0.49 -0.2
18,471 - Ac3H11_3805 0.49 -0.6
18,650 + Ac3H11_3805 0.58 +0.2
18,651 - Ac3H11_3805 0.58 +0.5
18,737 + Ac3H11_3805 0.62 +0.6
18,737 + Ac3H11_3805 0.62 -0.7
18,737 + Ac3H11_3805 0.62 -0.1
18,737 + Ac3H11_3805 0.62 -0.6
18,737 + Ac3H11_3805 0.62 -0.7
18,737 + Ac3H11_3805 0.62 +0.3
18,738 - Ac3H11_3805 0.62 -0.7
19,208 + Ac3H11_3805 0.85 +0.1
19,208 + Ac3H11_3805 0.85 +0.7
19,209 - Ac3H11_3805 0.85 -0.7
19,209 - Ac3H11_3805 0.85 +0.2
19,209 - Ac3H11_3805 0.85 -0.2
19,642 + Ac3H11_3806 0.22 -0.5
19,643 - Ac3H11_3806 0.22 -2.9
19,643 - Ac3H11_3806 0.22 -0.5
19,658 + Ac3H11_3806 0.24 -0.3
19,731 - Ac3H11_3806 0.34 -0.6
19,872 + Ac3H11_3806 0.54 -1.0
19,873 - Ac3H11_3806 0.54 -0.1
19,873 - Ac3H11_3806 0.54 +0.3
19,873 - Ac3H11_3806 0.54 +0.8
19,884 + Ac3H11_3806 0.55 +0.2
19,884 + Ac3H11_3806 0.55 -0.2
19,884 + Ac3H11_3806 0.55 -0.2
19,884 + Ac3H11_3806 0.55 +0.2
19,884 + Ac3H11_3806 0.55 -0.3
19,884 + Ac3H11_3806 0.55 -1.1
19,884 + Ac3H11_3806 0.55 +0.5
19,884 + Ac3H11_3806 0.55 +0.3
19,885 - Ac3H11_3806 0.56 -0.2
19,885 - Ac3H11_3806 0.56 -1.1
19,885 - Ac3H11_3806 0.56 -2.7
19,885 - Ac3H11_3806 0.56 -0.0
19,885 - Ac3H11_3806 0.56 -0.2
20,326 + Ac3H11_3807 0.23 +0.0
20,327 - Ac3H11_3807 0.23 +0.5
20,428 + Ac3H11_3807 0.41 +0.6
20,428 + Ac3H11_3807 0.41 -0.1
20,428 + Ac3H11_3807 0.41 -0.2
20,429 - Ac3H11_3807 0.42 +1.0
20,429 - Ac3H11_3807 0.42 +0.2
20,429 - Ac3H11_3807 0.42 +0.6
20,481 - Ac3H11_3807 0.51 -0.9
20,481 - Ac3H11_3807 0.51 +0.1

Or see this region's nucleotide sequence