Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3523

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3522 and Ac3H11_3523 are separated by 200 nucleotidesAc3H11_3523 and Ac3H11_3524 are separated by 192 nucleotides Ac3H11_3522 - Fumarylacetoacetate hydrolase family protein, at 66,794 to 68,011 _3522 Ac3H11_3523 - Xylonate dehydratase (EC 4.2.1.82), at 68,212 to 69,993 _3523 Ac3H11_3524 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 70,186 to 71,193 _3524 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 67.404 kb on - strand, within Ac3H11_3522at 67.468 kb on - strand, within Ac3H11_3522at 67.468 kb on - strand, within Ac3H11_3522at 67.767 kb on + strand, within Ac3H11_3522at 67.768 kb on - strand, within Ac3H11_3522at 67.837 kb on - strand, within Ac3H11_3522at 68.011 kb on + strandat 68.011 kb on + strandat 68.011 kb on + strandat 68.011 kb on + strandat 68.700 kb on - strand, within Ac3H11_3523at 69.080 kb on + strand, within Ac3H11_3523at 69.199 kb on - strand, within Ac3H11_3523at 69.199 kb on - strand, within Ac3H11_3523at 69.199 kb on - strand, within Ac3H11_3523at 69.245 kb on + strand, within Ac3H11_3523at 69.245 kb on + strand, within Ac3H11_3523at 69.279 kb on - strand, within Ac3H11_3523at 69.650 kb on + strand, within Ac3H11_3523at 69.651 kb on - strand, within Ac3H11_3523at 69.674 kb on + strand, within Ac3H11_3523at 69.893 kb on + strandat 70.019 kb on + strandat 70.259 kb on + strandat 70.260 kb on - strandat 70.260 kb on - strandat 70.493 kb on + strand, within Ac3H11_3524at 70.493 kb on + strand, within Ac3H11_3524at 70.493 kb on + strand, within Ac3H11_3524at 70.493 kb on + strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.494 kb on - strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.532 kb on + strand, within Ac3H11_3524at 70.533 kb on - strand, within Ac3H11_3524at 70.605 kb on - strand, within Ac3H11_3524

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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67,404 - Ac3H11_3522 0.50 +0.5
67,468 - Ac3H11_3522 0.55 +0.7
67,468 - Ac3H11_3522 0.55 -1.0
67,767 + Ac3H11_3522 0.80 +0.0
67,768 - Ac3H11_3522 0.80 +0.0
67,837 - Ac3H11_3522 0.86 -0.1
68,011 + +0.4
68,011 + +0.8
68,011 + -0.0
68,011 + +0.2
68,700 - Ac3H11_3523 0.27 +1.1
69,080 + Ac3H11_3523 0.49 -0.4
69,199 - Ac3H11_3523 0.55 +0.1
69,199 - Ac3H11_3523 0.55 +0.1
69,199 - Ac3H11_3523 0.55 -0.2
69,245 + Ac3H11_3523 0.58 +0.7
69,245 + Ac3H11_3523 0.58 -1.6
69,279 - Ac3H11_3523 0.60 -0.1
69,650 + Ac3H11_3523 0.81 +2.1
69,651 - Ac3H11_3523 0.81 -1.3
69,674 + Ac3H11_3523 0.82 -0.4
69,893 + +0.7
70,019 + +0.8
70,259 + +1.2
70,260 - -0.6
70,260 - +0.4
70,493 + Ac3H11_3524 0.30 +2.2
70,493 + Ac3H11_3524 0.30 -0.4
70,493 + Ac3H11_3524 0.30 -0.0
70,493 + Ac3H11_3524 0.30 -0.8
70,494 - Ac3H11_3524 0.31 -1.8
70,494 - Ac3H11_3524 0.31 +0.4
70,494 - Ac3H11_3524 0.31 +0.3
70,494 - Ac3H11_3524 0.31 +1.3
70,494 - Ac3H11_3524 0.31 +0.2
70,494 - Ac3H11_3524 0.31 -1.8
70,494 - Ac3H11_3524 0.31 -0.3
70,532 + Ac3H11_3524 0.34 -0.1
70,532 + Ac3H11_3524 0.34 +1.2
70,532 + Ac3H11_3524 0.34 +1.0
70,532 + Ac3H11_3524 0.34 -2.0
70,532 + Ac3H11_3524 0.34 +0.1
70,533 - Ac3H11_3524 0.34 -0.7
70,605 - Ac3H11_3524 0.42 +0.1

Or see this region's nucleotide sequence