Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2713

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2712 and Ac3H11_2713 are separated by 736 nucleotidesAc3H11_2713 and Ac3H11_2714 are separated by 51 nucleotidesAc3H11_2714 and Ac3H11_2715 are separated by 147 nucleotides Ac3H11_2712 - Transcriptional regulator, IclR family, at 1,012,444 to 1,013,280 _2712 Ac3H11_2713 - Tricarboxylate transport protein TctC, at 1,014,017 to 1,014,253 _2713 Ac3H11_2714 - Tricarboxylate transport protein TctC, at 1,014,305 to 1,014,988 _2714 Ac3H11_2715 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,015,136 to 1,016,935 _2715 Position (kb) 1014 1015Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1013.048 kb on - strand, within Ac3H11_2712at 1013.066 kb on + strand, within Ac3H11_2712at 1013.102 kb on - strand, within Ac3H11_2712at 1013.164 kb on + strand, within Ac3H11_2712at 1013.165 kb on - strand, within Ac3H11_2712at 1013.213 kb on + strandat 1013.346 kb on + strandat 1013.563 kb on - strandat 1013.653 kb on - strandat 1013.833 kb on + strandat 1013.886 kb on + strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.890 kb on + strandat 1013.891 kb on - strandat 1013.891 kb on - strandat 1013.891 kb on - strandat 1013.891 kb on - strandat 1014.158 kb on + strand, within Ac3H11_2713at 1014.159 kb on - strand, within Ac3H11_2713at 1014.281 kb on + strandat 1014.281 kb on + strandat 1014.282 kb on - strandat 1014.282 kb on - strandat 1014.282 kb on - strandat 1014.282 kb on - strandat 1014.401 kb on + strand, within Ac3H11_2714at 1014.401 kb on + strand, within Ac3H11_2714at 1014.401 kb on + strand, within Ac3H11_2714at 1014.401 kb on + strand, within Ac3H11_2714at 1014.401 kb on + strand, within Ac3H11_2714at 1014.401 kb on + strand, within Ac3H11_2714at 1014.401 kb on + strand, within Ac3H11_2714at 1014.402 kb on - strand, within Ac3H11_2714at 1014.402 kb on - strand, within Ac3H11_2714at 1014.402 kb on - strand, within Ac3H11_2714at 1014.402 kb on - strand, within Ac3H11_2714at 1014.402 kb on - strand, within Ac3H11_2714at 1014.402 kb on - strand, within Ac3H11_2714at 1014.407 kb on + strand, within Ac3H11_2714at 1014.407 kb on + strand, within Ac3H11_2714at 1014.407 kb on + strand, within Ac3H11_2714at 1014.407 kb on + strand, within Ac3H11_2714at 1014.407 kb on + strand, within Ac3H11_2714at 1014.407 kb on + strand, within Ac3H11_2714at 1014.407 kb on + strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.408 kb on - strand, within Ac3H11_2714at 1014.494 kb on + strand, within Ac3H11_2714at 1014.495 kb on - strand, within Ac3H11_2714at 1014.528 kb on + strand, within Ac3H11_2714at 1014.528 kb on + strand, within Ac3H11_2714at 1014.529 kb on - strand, within Ac3H11_2714at 1014.529 kb on - strand, within Ac3H11_2714at 1014.569 kb on + strand, within Ac3H11_2714at 1014.570 kb on - strand, within Ac3H11_2714at 1014.650 kb on + strand, within Ac3H11_2714at 1014.650 kb on + strand, within Ac3H11_2714at 1014.650 kb on + strand, within Ac3H11_2714at 1014.650 kb on + strand, within Ac3H11_2714at 1014.650 kb on + strand, within Ac3H11_2714at 1014.651 kb on - strand, within Ac3H11_2714at 1014.651 kb on - strand, within Ac3H11_2714at 1014.651 kb on - strand, within Ac3H11_2714at 1014.651 kb on - strand, within Ac3H11_2714at 1014.759 kb on + strand, within Ac3H11_2714at 1014.759 kb on + strand, within Ac3H11_2714at 1014.759 kb on + strand, within Ac3H11_2714at 1014.759 kb on + strand, within Ac3H11_2714at 1014.760 kb on - strand, within Ac3H11_2714at 1014.760 kb on - strand, within Ac3H11_2714at 1014.780 kb on - strand, within Ac3H11_2714at 1014.780 kb on - strand, within Ac3H11_2714at 1014.780 kb on - strand, within Ac3H11_2714at 1014.821 kb on + strand, within Ac3H11_2714at 1014.821 kb on + strand, within Ac3H11_2714at 1014.822 kb on - strand, within Ac3H11_2714at 1014.822 kb on - strand, within Ac3H11_2714at 1014.888 kb on + strand, within Ac3H11_2714at 1014.923 kb on + strandat 1014.924 kb on - strandat 1014.945 kb on + strandat 1014.945 kb on + strandat 1014.946 kb on - strandat 1014.946 kb on - strandat 1015.042 kb on + strandat 1015.042 kb on + strandat 1015.043 kb on - strandat 1015.087 kb on - strandat 1015.087 kb on - strandat 1015.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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1,013,048 - Ac3H11_2712 0.72 -2.0
1,013,066 + Ac3H11_2712 0.74 +0.4
1,013,102 - Ac3H11_2712 0.79 -1.1
1,013,164 + Ac3H11_2712 0.86 -0.2
1,013,165 - Ac3H11_2712 0.86 -1.9
1,013,213 + +0.3
1,013,346 + +0.8
1,013,563 - -0.7
1,013,653 - +0.5
1,013,833 + -0.0
1,013,886 + -0.4
1,013,887 - -0.6
1,013,887 - -0.1
1,013,887 - +0.8
1,013,887 - +0.2
1,013,887 - +0.5
1,013,887 - -0.7
1,013,887 - -1.3
1,013,890 + +0.2
1,013,891 - +0.2
1,013,891 - -0.6
1,013,891 - -0.7
1,013,891 - -0.5
1,014,158 + Ac3H11_2713 0.59 -0.7
1,014,159 - Ac3H11_2713 0.60 -0.1
1,014,281 + -0.2
1,014,281 + -1.0
1,014,282 - -0.8
1,014,282 - -0.2
1,014,282 - +0.8
1,014,282 - -0.3
1,014,401 + Ac3H11_2714 0.14 +1.0
1,014,401 + Ac3H11_2714 0.14 -1.0
1,014,401 + Ac3H11_2714 0.14 +0.3
1,014,401 + Ac3H11_2714 0.14 -0.7
1,014,401 + Ac3H11_2714 0.14 -0.7
1,014,401 + Ac3H11_2714 0.14 -0.2
1,014,401 + Ac3H11_2714 0.14 +0.1
1,014,402 - Ac3H11_2714 0.14 -0.3
1,014,402 - Ac3H11_2714 0.14 +0.5
1,014,402 - Ac3H11_2714 0.14 -0.5
1,014,402 - Ac3H11_2714 0.14 +0.5
1,014,402 - Ac3H11_2714 0.14 -0.3
1,014,402 - Ac3H11_2714 0.14 +0.2
1,014,407 + Ac3H11_2714 0.15 +0.1
1,014,407 + Ac3H11_2714 0.15 +0.5
1,014,407 + Ac3H11_2714 0.15 -0.9
1,014,407 + Ac3H11_2714 0.15 +0.3
1,014,407 + Ac3H11_2714 0.15 -0.7
1,014,407 + Ac3H11_2714 0.15 -0.5
1,014,407 + Ac3H11_2714 0.15 +1.1
1,014,408 - Ac3H11_2714 0.15 -0.8
1,014,408 - Ac3H11_2714 0.15 +0.3
1,014,408 - Ac3H11_2714 0.15 -0.4
1,014,408 - Ac3H11_2714 0.15 -0.6
1,014,408 - Ac3H11_2714 0.15 -2.3
1,014,408 - Ac3H11_2714 0.15 -0.8
1,014,408 - Ac3H11_2714 0.15 +0.1
1,014,408 - Ac3H11_2714 0.15 +0.1
1,014,408 - Ac3H11_2714 0.15 -1.2
1,014,408 - Ac3H11_2714 0.15 +0.1
1,014,494 + Ac3H11_2714 0.28 +0.7
1,014,495 - Ac3H11_2714 0.28 +1.1
1,014,528 + Ac3H11_2714 0.33 +0.4
1,014,528 + Ac3H11_2714 0.33 -0.5
1,014,529 - Ac3H11_2714 0.33 +0.2
1,014,529 - Ac3H11_2714 0.33 -0.6
1,014,569 + Ac3H11_2714 0.39 -0.5
1,014,570 - Ac3H11_2714 0.39 -0.7
1,014,650 + Ac3H11_2714 0.50 -0.2
1,014,650 + Ac3H11_2714 0.50 +0.1
1,014,650 + Ac3H11_2714 0.50 -0.5
1,014,650 + Ac3H11_2714 0.50 +0.3
1,014,650 + Ac3H11_2714 0.50 -2.8
1,014,651 - Ac3H11_2714 0.51 -0.6
1,014,651 - Ac3H11_2714 0.51 +0.5
1,014,651 - Ac3H11_2714 0.51 +1.0
1,014,651 - Ac3H11_2714 0.51 -0.4
1,014,759 + Ac3H11_2714 0.66 -0.7
1,014,759 + Ac3H11_2714 0.66 +0.1
1,014,759 + Ac3H11_2714 0.66 -1.1
1,014,759 + Ac3H11_2714 0.66 +3.2
1,014,760 - Ac3H11_2714 0.67 +1.4
1,014,760 - Ac3H11_2714 0.67 -0.0
1,014,780 - Ac3H11_2714 0.69 -0.7
1,014,780 - Ac3H11_2714 0.69 -0.7
1,014,780 - Ac3H11_2714 0.69 +0.9
1,014,821 + Ac3H11_2714 0.75 +0.7
1,014,821 + Ac3H11_2714 0.75 -1.1
1,014,822 - Ac3H11_2714 0.76 -0.9
1,014,822 - Ac3H11_2714 0.76 -0.5
1,014,888 + Ac3H11_2714 0.85 -0.5
1,014,923 + -1.2
1,014,924 - -0.1
1,014,945 + -0.3
1,014,945 + -2.0
1,014,946 - +0.1
1,014,946 - -1.0
1,015,042 + +1.3
1,015,042 + -0.4
1,015,043 - +0.0
1,015,087 - -0.2
1,015,087 - +0.5
1,015,124 + -0.9

Or see this region's nucleotide sequence