Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1531

Experiment: Cobalt chloride 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1530 and Ac3H11_1531 are separated by 337 nucleotidesAc3H11_1531 and Ac3H11_1532 are separated by 53 nucleotidesAc3H11_1532 and Ac3H11_1533 overlap by 4 nucleotides Ac3H11_1530 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 105,965 to 107,122 _1530 Ac3H11_1531 - Translation initiation factor 2, at 107,460 to 110,045 _1531 Ac3H11_1532 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 110,099 to 110,920 _1532 Ac3H11_1533 - Phosphoribosylanthranilate isomerase (EC 5.3.1.24), at 110,917 to 111,678 _1533 Position (kb) 107 108 109 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 107.159 kb on + strandat 107.159 kb on + strandat 107.160 kb on - strandat 107.160 kb on - strandat 107.160 kb on - strandat 107.160 kb on - strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.315 kb on + strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.316 kb on - strandat 107.327 kb on + strandat 107.327 kb on + strandat 107.327 kb on + strandat 107.327 kb on + strandat 107.331 kb on + strandat 107.332 kb on - strandat 107.513 kb on + strandat 107.513 kb on + strandat 107.513 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.646 kb on + strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.647 kb on - strandat 107.777 kb on + strand, within Ac3H11_1531at 107.777 kb on + strand, within Ac3H11_1531at 107.778 kb on - strand, within Ac3H11_1531at 107.791 kb on + strand, within Ac3H11_1531at 107.791 kb on + strand, within Ac3H11_1531at 107.792 kb on - strand, within Ac3H11_1531at 107.792 kb on - strand, within Ac3H11_1531at 107.792 kb on - strand, within Ac3H11_1531at 107.792 kb on - strand, within Ac3H11_1531at 107.799 kb on + strand, within Ac3H11_1531at 107.799 kb on + strand, within Ac3H11_1531at 107.799 kb on + strand, within Ac3H11_1531at 107.799 kb on + strand, within Ac3H11_1531at 107.799 kb on + strand, within Ac3H11_1531at 107.799 kb on + strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 107.800 kb on - strand, within Ac3H11_1531at 108.035 kb on + strand, within Ac3H11_1531at 108.035 kb on + strand, within Ac3H11_1531at 108.036 kb on - strand, within Ac3H11_1531at 108.036 kb on - strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.039 kb on + strand, within Ac3H11_1531at 108.040 kb on - strand, within Ac3H11_1531at 108.040 kb on - strand, within Ac3H11_1531at 108.040 kb on - strand, within Ac3H11_1531at 108.040 kb on - strand, within Ac3H11_1531at 108.040 kb on - strand, within Ac3H11_1531at 108.040 kb on - strand, within Ac3H11_1531at 108.509 kb on + strand, within Ac3H11_1531at 108.748 kb on + strand, within Ac3H11_1531at 108.749 kb on - strand, within Ac3H11_1531at 108.808 kb on + strand, within Ac3H11_1531at 108.808 kb on + strand, within Ac3H11_1531at 108.809 kb on - strand, within Ac3H11_1531at 108.809 kb on - strand, within Ac3H11_1531at 108.809 kb on - strand, within Ac3H11_1531at 108.857 kb on - strand, within Ac3H11_1531at 108.976 kb on + strand, within Ac3H11_1531at 108.976 kb on + strand, within Ac3H11_1531at 108.976 kb on + strand, within Ac3H11_1531at 109.020 kb on + strand, within Ac3H11_1531at 109.020 kb on + strand, within Ac3H11_1531at 109.020 kb on + strand, within Ac3H11_1531at 109.020 kb on + strand, within Ac3H11_1531at 109.021 kb on - strand, within Ac3H11_1531at 109.021 kb on - strand, within Ac3H11_1531at 109.021 kb on - strand, within Ac3H11_1531at 109.080 kb on + strand, within Ac3H11_1531at 109.080 kb on + strand, within Ac3H11_1531at 109.080 kb on + strand, within Ac3H11_1531at 109.080 kb on + strand, within Ac3H11_1531at 109.080 kb on + strand, within Ac3H11_1531at 109.081 kb on - strand, within Ac3H11_1531at 109.081 kb on - strand, within Ac3H11_1531at 109.081 kb on - strand, within Ac3H11_1531at 109.081 kb on - strand, within Ac3H11_1531at 109.081 kb on - strand, within Ac3H11_1531at 109.089 kb on + strand, within Ac3H11_1531at 109.089 kb on + strand, within Ac3H11_1531at 109.090 kb on - strand, within Ac3H11_1531at 109.090 kb on - strand, within Ac3H11_1531at 109.090 kb on - strand, within Ac3H11_1531at 109.315 kb on - strand, within Ac3H11_1531at 110.126 kb on + strandat 110.126 kb on + strandat 110.126 kb on + strandat 110.126 kb on + strandat 110.126 kb on + strandat 110.127 kb on - strandat 110.127 kb on - strandat 110.127 kb on - strandat 110.127 kb on - strandat 110.127 kb on - strandat 110.141 kb on + strandat 110.142 kb on - strandat 110.142 kb on - strandat 110.426 kb on + strand, within Ac3H11_1532at 110.426 kb on + strand, within Ac3H11_1532at 110.426 kb on + strand, within Ac3H11_1532at 110.426 kb on + strand, within Ac3H11_1532at 110.426 kb on + strand, within Ac3H11_1532at 110.426 kb on + strand, within Ac3H11_1532at 110.427 kb on - strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.432 kb on + strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.433 kb on - strand, within Ac3H11_1532at 110.481 kb on + strand, within Ac3H11_1532at 110.481 kb on + strand, within Ac3H11_1532at 110.481 kb on + strand, within Ac3H11_1532at 110.481 kb on + strand, within Ac3H11_1532at 110.481 kb on + strand, within Ac3H11_1532at 110.481 kb on + strand, within Ac3H11_1532at 110.482 kb on - strand, within Ac3H11_1532at 110.482 kb on - strand, within Ac3H11_1532at 110.482 kb on - strand, within Ac3H11_1532at 110.482 kb on - strand, within Ac3H11_1532at 110.675 kb on + strand, within Ac3H11_1532at 110.675 kb on + strand, within Ac3H11_1532at 110.675 kb on + strand, within Ac3H11_1532at 110.675 kb on + strand, within Ac3H11_1532at 110.675 kb on + strand, within Ac3H11_1532at 110.675 kb on + strand, within Ac3H11_1532at 110.676 kb on - strand, within Ac3H11_1532at 110.676 kb on - strand, within Ac3H11_1532at 110.846 kb on + strandat 110.847 kb on - strandat 110.864 kb on + strandat 110.864 kb on + strandat 110.865 kb on - strandat 110.865 kb on - strandat 110.865 kb on - strandat 110.903 kb on + strandat 110.903 kb on + strandat 110.903 kb on + strandat 110.903 kb on + strandat 110.904 kb on - strandat 110.904 kb on - strandat 110.904 kb on - strandat 110.904 kb on - strandat 110.904 kb on - strandat 111.043 kb on + strand, within Ac3H11_1533at 111.043 kb on + strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533at 111.044 kb on - strand, within Ac3H11_1533

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM
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107,159 + +1.9
107,159 + -1.1
107,160 - +1.3
107,160 - +0.2
107,160 - -0.2
107,160 - +0.6
107,315 + -1.5
107,315 + +0.5
107,315 + -1.5
107,315 + +0.3
107,315 + -0.0
107,315 + -0.4
107,315 + +0.2
107,315 + -0.5
107,315 + +0.9
107,315 + +0.3
107,315 + -2.3
107,315 + -0.2
107,315 + +1.0
107,315 + +0.1
107,315 + -2.2
107,315 + -0.1
107,315 + +0.5
107,315 + +0.9
107,316 - -0.2
107,316 - +1.2
107,316 - +1.8
107,316 - +1.2
107,316 - +3.8
107,316 - +0.2
107,316 - -0.2
107,316 - +0.7
107,316 - -0.4
107,316 - -0.4
107,316 - -0.9
107,316 - +0.7
107,327 + +0.4
107,327 + +0.1
107,327 + -1.7
107,327 + +1.8
107,331 + -0.6
107,332 - +1.1
107,513 + -0.1
107,513 + -1.9
107,513 + -0.4
107,646 + -3.5
107,646 + -2.9
107,646 + -0.0
107,646 + -0.3
107,646 + +0.5
107,646 + +1.0
107,646 + -1.9
107,646 + -3.4
107,646 + -0.1
107,646 + -0.6
107,646 + +0.7
107,646 + -0.4
107,647 - +0.4
107,647 - +1.7
107,647 - -0.6
107,647 - +2.7
107,647 - +2.1
107,647 - +0.0
107,647 - +1.1
107,647 - +1.4
107,647 - +0.1
107,647 - -1.4
107,647 - +2.2
107,777 + Ac3H11_1531 0.12 +0.2
107,777 + Ac3H11_1531 0.12 -0.3
107,778 - Ac3H11_1531 0.12 -0.4
107,791 + Ac3H11_1531 0.13 -0.4
107,791 + Ac3H11_1531 0.13 -1.3
107,792 - Ac3H11_1531 0.13 +1.0
107,792 - Ac3H11_1531 0.13 +0.2
107,792 - Ac3H11_1531 0.13 -0.5
107,792 - Ac3H11_1531 0.13 -1.0
107,799 + Ac3H11_1531 0.13 +2.7
107,799 + Ac3H11_1531 0.13 -0.2
107,799 + Ac3H11_1531 0.13 -0.4
107,799 + Ac3H11_1531 0.13 +0.9
107,799 + Ac3H11_1531 0.13 -0.7
107,799 + Ac3H11_1531 0.13 -0.4
107,800 - Ac3H11_1531 0.13 -0.5
107,800 - Ac3H11_1531 0.13 -0.9
107,800 - Ac3H11_1531 0.13 -0.4
107,800 - Ac3H11_1531 0.13 +0.4
107,800 - Ac3H11_1531 0.13 +3.2
107,800 - Ac3H11_1531 0.13 +1.8
107,800 - Ac3H11_1531 0.13 +0.5
107,800 - Ac3H11_1531 0.13 +3.3
108,035 + Ac3H11_1531 0.22 +0.1
108,035 + Ac3H11_1531 0.22 -1.2
108,036 - Ac3H11_1531 0.22 +1.2
108,036 - Ac3H11_1531 0.22 +1.8
108,039 + Ac3H11_1531 0.22 +0.7
108,039 + Ac3H11_1531 0.22 -0.2
108,039 + Ac3H11_1531 0.22 -0.6
108,039 + Ac3H11_1531 0.22 +0.7
108,039 + Ac3H11_1531 0.22 +0.4
108,039 + Ac3H11_1531 0.22 +1.6
108,039 + Ac3H11_1531 0.22 +1.6
108,039 + Ac3H11_1531 0.22 -0.9
108,039 + Ac3H11_1531 0.22 -0.5
108,039 + Ac3H11_1531 0.22 -0.5
108,039 + Ac3H11_1531 0.22 +1.4
108,039 + Ac3H11_1531 0.22 -0.2
108,039 + Ac3H11_1531 0.22 +2.1
108,039 + Ac3H11_1531 0.22 +0.3
108,039 + Ac3H11_1531 0.22 -1.6
108,040 - Ac3H11_1531 0.22 +4.1
108,040 - Ac3H11_1531 0.22 -0.7
108,040 - Ac3H11_1531 0.22 -0.7
108,040 - Ac3H11_1531 0.22 -0.5
108,040 - Ac3H11_1531 0.22 -0.4
108,040 - Ac3H11_1531 0.22 +0.6
108,509 + Ac3H11_1531 0.41 -0.1
108,748 + Ac3H11_1531 0.50 -0.4
108,749 - Ac3H11_1531 0.50 +0.5
108,808 + Ac3H11_1531 0.52 -0.6
108,808 + Ac3H11_1531 0.52 +2.5
108,809 - Ac3H11_1531 0.52 +1.6
108,809 - Ac3H11_1531 0.52 -1.3
108,809 - Ac3H11_1531 0.52 +0.1
108,857 - Ac3H11_1531 0.54 -2.3
108,976 + Ac3H11_1531 0.59 -0.5
108,976 + Ac3H11_1531 0.59 +0.4
108,976 + Ac3H11_1531 0.59 +1.9
109,020 + Ac3H11_1531 0.60 +1.3
109,020 + Ac3H11_1531 0.60 -0.8
109,020 + Ac3H11_1531 0.60 -0.5
109,020 + Ac3H11_1531 0.60 +0.7
109,021 - Ac3H11_1531 0.60 +0.1
109,021 - Ac3H11_1531 0.60 -0.4
109,021 - Ac3H11_1531 0.60 +0.1
109,080 + Ac3H11_1531 0.63 -1.9
109,080 + Ac3H11_1531 0.63 +0.6
109,080 + Ac3H11_1531 0.63 +1.0
109,080 + Ac3H11_1531 0.63 +0.5
109,080 + Ac3H11_1531 0.63 -1.2
109,081 - Ac3H11_1531 0.63 +0.2
109,081 - Ac3H11_1531 0.63 +2.1
109,081 - Ac3H11_1531 0.63 +1.1
109,081 - Ac3H11_1531 0.63 -0.5
109,081 - Ac3H11_1531 0.63 +0.7
109,089 + Ac3H11_1531 0.63 +1.4
109,089 + Ac3H11_1531 0.63 -0.7
109,090 - Ac3H11_1531 0.63 -0.9
109,090 - Ac3H11_1531 0.63 +1.5
109,090 - Ac3H11_1531 0.63 -0.4
109,315 - Ac3H11_1531 0.72 +0.4
110,126 + +0.9
110,126 + +0.9
110,126 + +0.5
110,126 + +0.8
110,126 + +0.9
110,127 - +0.2
110,127 - +0.3
110,127 - +0.4
110,127 - +1.8
110,127 - +1.1
110,141 + +0.3
110,142 - +1.6
110,142 - +0.9
110,426 + Ac3H11_1532 0.40 +0.5
110,426 + Ac3H11_1532 0.40 +0.3
110,426 + Ac3H11_1532 0.40 +1.5
110,426 + Ac3H11_1532 0.40 +1.2
110,426 + Ac3H11_1532 0.40 +0.4
110,426 + Ac3H11_1532 0.40 +0.7
110,427 - Ac3H11_1532 0.40 +1.9
110,432 + Ac3H11_1532 0.41 +0.4
110,432 + Ac3H11_1532 0.41 +0.9
110,432 + Ac3H11_1532 0.41 +0.4
110,432 + Ac3H11_1532 0.41 +0.2
110,432 + Ac3H11_1532 0.41 -0.0
110,432 + Ac3H11_1532 0.41 +0.7
110,432 + Ac3H11_1532 0.41 +1.1
110,432 + Ac3H11_1532 0.41 +0.7
110,432 + Ac3H11_1532 0.41 +0.3
110,432 + Ac3H11_1532 0.41 +0.1
110,433 - Ac3H11_1532 0.41 +2.4
110,433 - Ac3H11_1532 0.41 -0.7
110,433 - Ac3H11_1532 0.41 +2.7
110,433 - Ac3H11_1532 0.41 +2.0
110,433 - Ac3H11_1532 0.41 -0.2
110,433 - Ac3H11_1532 0.41 +0.3
110,433 - Ac3H11_1532 0.41 +0.0
110,433 - Ac3H11_1532 0.41 -0.5
110,433 - Ac3H11_1532 0.41 +1.0
110,433 - Ac3H11_1532 0.41 +3.3
110,433 - Ac3H11_1532 0.41 -0.0
110,433 - Ac3H11_1532 0.41 +0.1
110,433 - Ac3H11_1532 0.41 +0.5
110,433 - Ac3H11_1532 0.41 +1.3
110,433 - Ac3H11_1532 0.41 -1.5
110,481 + Ac3H11_1532 0.46 +1.1
110,481 + Ac3H11_1532 0.46 +2.1
110,481 + Ac3H11_1532 0.46 -1.0
110,481 + Ac3H11_1532 0.46 +0.7
110,481 + Ac3H11_1532 0.46 +0.3
110,481 + Ac3H11_1532 0.46 +0.7
110,482 - Ac3H11_1532 0.47 -0.0
110,482 - Ac3H11_1532 0.47 +1.4
110,482 - Ac3H11_1532 0.47 +0.9
110,482 - Ac3H11_1532 0.47 +1.9
110,675 + Ac3H11_1532 0.70 -0.2
110,675 + Ac3H11_1532 0.70 +0.6
110,675 + Ac3H11_1532 0.70 +0.0
110,675 + Ac3H11_1532 0.70 +1.3
110,675 + Ac3H11_1532 0.70 +0.8
110,675 + Ac3H11_1532 0.70 +1.0
110,676 - Ac3H11_1532 0.70 +1.1
110,676 - Ac3H11_1532 0.70 +1.6
110,846 + -0.2
110,847 - +1.1
110,864 + +0.1
110,864 + +2.4
110,865 - -0.4
110,865 - +0.5
110,865 - +1.5
110,903 + +0.5
110,903 + +0.0
110,903 + +0.6
110,903 + -0.1
110,904 - -0.9
110,904 - -0.3
110,904 - +1.5
110,904 - -0.5
110,904 - -0.6
111,043 + Ac3H11_1533 0.17 -0.0
111,043 + Ac3H11_1533 0.17 +0.1
111,044 - Ac3H11_1533 0.17 +0.7
111,044 - Ac3H11_1533 0.17 -0.1
111,044 - Ac3H11_1533 0.17 +1.1
111,044 - Ac3H11_1533 0.17 +0.1
111,044 - Ac3H11_1533 0.17 +1.1
111,044 - Ac3H11_1533 0.17 -0.6
111,044 - Ac3H11_1533 0.17 +0.9
111,044 - Ac3H11_1533 0.17 +2.4
111,044 - Ac3H11_1533 0.17 +1.5
111,044 - Ac3H11_1533 0.17 -0.2
111,044 - Ac3H11_1533 0.17 -0.1
111,044 - Ac3H11_1533 0.17 -0.8

Or see this region's nucleotide sequence