Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32500 and AZOBR_RS32505 are separated by 40 nucleotides AZOBR_RS32505 and AZOBR_RS32510 are separated by 49 nucleotides AZOBR_RS32510 and AZOBR_RS32515 are separated by 261 nucleotides
AZOBR_RS32500: AZOBR_RS32500 - DMSO reductase, at 657,294 to 658,259
_RS32500
AZOBR_RS32505: AZOBR_RS32505 - hypothetical protein, at 658,300 to 658,668
_RS32505
AZOBR_RS32510: AZOBR_RS32510 - sulfoacetaldehyde acetyltransferase, at 658,718 to 660,493
_RS32510
AZOBR_RS32515: AZOBR_RS32515 - chromosome partitioning protein, at 660,755 to 661,612
_RS32515
Position (kb) 658
659
660
661 Strain fitness (log2 ratio) -2
-1
0
1
2 at 657.759 kb on + strand, within AZOBR_RS32500 at 657.760 kb on - strand, within AZOBR_RS32500 at 658.003 kb on - strand, within AZOBR_RS32500 at 658.240 kb on - strand at 658.381 kb on + strand, within AZOBR_RS32505 at 658.381 kb on + strand, within AZOBR_RS32505 at 658.382 kb on - strand, within AZOBR_RS32505 at 658.586 kb on - strand, within AZOBR_RS32505 at 659.093 kb on + strand, within AZOBR_RS32510 at 659.106 kb on + strand, within AZOBR_RS32510 at 659.106 kb on + strand, within AZOBR_RS32510 at 659.468 kb on + strand, within AZOBR_RS32510 at 659.469 kb on - strand, within AZOBR_RS32510 at 659.469 kb on - strand, within AZOBR_RS32510 at 659.469 kb on - strand, within AZOBR_RS32510 at 659.576 kb on + strand, within AZOBR_RS32510 at 659.576 kb on + strand, within AZOBR_RS32510 at 659.646 kb on + strand, within AZOBR_RS32510 at 659.647 kb on - strand, within AZOBR_RS32510 at 659.987 kb on + strand, within AZOBR_RS32510 at 660.260 kb on + strand, within AZOBR_RS32510 at 660.260 kb on + strand, within AZOBR_RS32510 at 660.260 kb on + strand, within AZOBR_RS32510 at 660.260 kb on + strand, within AZOBR_RS32510 at 660.261 kb on - strand, within AZOBR_RS32510 at 660.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 657,759 + AZOBR_RS32500 0.48 +1.9 657,760 - AZOBR_RS32500 0.48 +0.0 658,003 - AZOBR_RS32500 0.73 +0.3 658,240 - +0.2 658,381 + AZOBR_RS32505 0.22 +0.5 658,381 + AZOBR_RS32505 0.22 -2.1 658,382 - AZOBR_RS32505 0.22 -2.3 658,586 - AZOBR_RS32505 0.78 +0.3 659,093 + AZOBR_RS32510 0.21 -0.8 659,106 + AZOBR_RS32510 0.22 -0.4 659,106 + AZOBR_RS32510 0.22 +0.2 659,468 + AZOBR_RS32510 0.42 -0.9 659,469 - AZOBR_RS32510 0.42 +0.1 659,469 - AZOBR_RS32510 0.42 +0.3 659,469 - AZOBR_RS32510 0.42 -0.6 659,576 + AZOBR_RS32510 0.48 -0.9 659,576 + AZOBR_RS32510 0.48 +0.1 659,646 + AZOBR_RS32510 0.52 -0.1 659,647 - AZOBR_RS32510 0.52 -0.9 659,987 + AZOBR_RS32510 0.71 -1.8 660,260 + AZOBR_RS32510 0.87 -0.2 660,260 + AZOBR_RS32510 0.87 -1.3 660,260 + AZOBR_RS32510 0.87 -1.2 660,260 + AZOBR_RS32510 0.87 +0.1 660,261 - AZOBR_RS32510 0.87 +0.0 660,491 + +0.5
Or see this region's nucleotide sequence