Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31635 and AZOBR_RS31640 are separated by 104 nucleotides AZOBR_RS31640 and AZOBR_RS31645 are separated by 28 nucleotides
AZOBR_RS31635: AZOBR_RS31635 - lactoylglutathione lyase, at 461,578 to 461,973
_RS31635
AZOBR_RS31640: AZOBR_RS31640 - hypothetical protein, at 462,078 to 462,596
_RS31640
AZOBR_RS31645: AZOBR_RS31645 - 2-keto-gluconate dehydrogenase, at 462,625 to 464,196
_RS31645
Position (kb) 462
463 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 461.178 kb on + strand at 461.179 kb on - strand at 461.179 kb on - strand at 461.328 kb on + strand at 461.328 kb on + strand at 461.328 kb on + strand at 461.415 kb on + strand at 461.416 kb on - strand at 461.496 kb on + strand at 461.500 kb on - strand at 461.503 kb on + strand at 461.504 kb on - strand at 461.638 kb on + strand, within AZOBR_RS31635 at 461.638 kb on + strand, within AZOBR_RS31635 at 461.638 kb on + strand, within AZOBR_RS31635 at 461.639 kb on - strand, within AZOBR_RS31635 at 461.701 kb on + strand, within AZOBR_RS31635 at 461.701 kb on + strand, within AZOBR_RS31635 at 461.785 kb on + strand, within AZOBR_RS31635 at 461.933 kb on - strand, within AZOBR_RS31635 at 462.181 kb on - strand, within AZOBR_RS31640 at 462.244 kb on - strand, within AZOBR_RS31640 at 462.274 kb on - strand, within AZOBR_RS31640 at 462.274 kb on - strand, within AZOBR_RS31640 at 462.274 kb on - strand, within AZOBR_RS31640 at 462.274 kb on - strand, within AZOBR_RS31640 at 462.274 kb on - strand, within AZOBR_RS31640 at 462.274 kb on - strand, within AZOBR_RS31640 at 462.337 kb on - strand, within AZOBR_RS31640 at 462.393 kb on + strand, within AZOBR_RS31640 at 462.495 kb on + strand, within AZOBR_RS31640 at 462.495 kb on + strand, within AZOBR_RS31640 at 462.495 kb on + strand, within AZOBR_RS31640 at 462.496 kb on - strand, within AZOBR_RS31640 at 462.559 kb on - strand at 462.806 kb on + strand, within AZOBR_RS31645 at 462.806 kb on + strand, within AZOBR_RS31645 at 462.807 kb on - strand, within AZOBR_RS31645 at 463.142 kb on - strand, within AZOBR_RS31645 at 463.525 kb on + strand, within AZOBR_RS31645 at 463.526 kb on - strand, within AZOBR_RS31645 at 463.526 kb on - strand, within AZOBR_RS31645 at 463.526 kb on - strand, within AZOBR_RS31645 at 463.526 kb on - strand, within AZOBR_RS31645 at 463.526 kb on - strand, within AZOBR_RS31645 at 463.526 kb on - strand, within AZOBR_RS31645 at 463.552 kb on + strand, within AZOBR_RS31645 at 463.553 kb on - strand, within AZOBR_RS31645 at 463.582 kb on + strand, within AZOBR_RS31645 at 463.582 kb on + strand, within AZOBR_RS31645 at 463.583 kb on - strand, within AZOBR_RS31645 at 463.583 kb on - strand, within AZOBR_RS31645
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 461,178 + +0.3 461,179 - -1.8 461,179 - +0.4 461,328 + +0.2 461,328 + -2.6 461,328 + +0.1 461,415 + -1.9 461,416 - +0.2 461,496 + +3.7 461,500 - -2.2 461,503 + -1.5 461,504 - +0.0 461,638 + AZOBR_RS31635 0.15 +0.3 461,638 + AZOBR_RS31635 0.15 +2.2 461,638 + AZOBR_RS31635 0.15 +1.2 461,639 - AZOBR_RS31635 0.15 +2.0 461,701 + AZOBR_RS31635 0.31 +0.3 461,701 + AZOBR_RS31635 0.31 -0.3 461,785 + AZOBR_RS31635 0.52 +1.9 461,933 - AZOBR_RS31635 0.90 +0.3 462,181 - AZOBR_RS31640 0.20 +0.7 462,244 - AZOBR_RS31640 0.32 -0.3 462,274 - AZOBR_RS31640 0.38 +2.2 462,274 - AZOBR_RS31640 0.38 +0.2 462,274 - AZOBR_RS31640 0.38 +1.0 462,274 - AZOBR_RS31640 0.38 +1.8 462,274 - AZOBR_RS31640 0.38 +0.6 462,274 - AZOBR_RS31640 0.38 +0.2 462,337 - AZOBR_RS31640 0.50 +0.1 462,393 + AZOBR_RS31640 0.61 +3.1 462,495 + AZOBR_RS31640 0.80 +0.7 462,495 + AZOBR_RS31640 0.80 +0.5 462,495 + AZOBR_RS31640 0.80 -1.0 462,496 - AZOBR_RS31640 0.81 +0.6 462,559 - +0.3 462,806 + AZOBR_RS31645 0.12 +0.2 462,806 + AZOBR_RS31645 0.12 -1.2 462,807 - AZOBR_RS31645 0.12 -0.5 463,142 - AZOBR_RS31645 0.33 +0.4 463,525 + AZOBR_RS31645 0.57 +0.3 463,526 - AZOBR_RS31645 0.57 +1.0 463,526 - AZOBR_RS31645 0.57 +0.1 463,526 - AZOBR_RS31645 0.57 +1.2 463,526 - AZOBR_RS31645 0.57 +0.6 463,526 - AZOBR_RS31645 0.57 +1.1 463,526 - AZOBR_RS31645 0.57 -0.5 463,552 + AZOBR_RS31645 0.59 -0.5 463,553 - AZOBR_RS31645 0.59 -0.2 463,582 + AZOBR_RS31645 0.61 +0.1 463,582 + AZOBR_RS31645 0.61 -0.5 463,583 - AZOBR_RS31645 0.61 +0.6 463,583 - AZOBR_RS31645 0.61 +2.2
Or see this region's nucleotide sequence