Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29925 and AZOBR_RS29930 are separated by 125 nucleotides AZOBR_RS29930 and AZOBR_RS29935 are separated by 20 nucleotides AZOBR_RS29935 and AZOBR_RS29940 are separated by 13 nucleotides AZOBR_RS29940 and AZOBR_RS29945 are separated by 147 nucleotides
AZOBR_RS29925: AZOBR_RS29925 - ATP synthase, at 57,119 to 58,459
_RS29925
AZOBR_RS29930: AZOBR_RS29930 - flagellar basal body rod protein FlgG, at 58,585 to 58,977
_RS29930
AZOBR_RS29935: AZOBR_RS29935 - flagellar basal-body rod protein FlgC, at 58,998 to 59,417
_RS29935
AZOBR_RS29940: AZOBR_RS29940 - flagellar basal body protein FliE, at 59,431 to 59,793
_RS29940
AZOBR_RS29945: AZOBR_RS29945 - flagellar biosynthesis protein FliQ, at 59,941 to 60,207
_RS29945
Position (kb) 58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 57.753 kb on + strand, within AZOBR_RS29925 at 57.753 kb on + strand, within AZOBR_RS29925 at 57.753 kb on + strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 58.636 kb on + strand, within AZOBR_RS29930 at 58.637 kb on - strand, within AZOBR_RS29930 at 59.277 kb on + strand, within AZOBR_RS29935 at 59.277 kb on + strand, within AZOBR_RS29935 at 59.765 kb on - strand at 59.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 57,753 + AZOBR_RS29925 0.47 -1.1 57,753 + AZOBR_RS29925 0.47 +0.9 57,753 + AZOBR_RS29925 0.47 -0.5 57,754 - AZOBR_RS29925 0.47 +0.7 57,754 - AZOBR_RS29925 0.47 -1.3 57,754 - AZOBR_RS29925 0.47 +0.2 57,754 - AZOBR_RS29925 0.47 -0.7 57,754 - AZOBR_RS29925 0.47 -0.6 57,754 - AZOBR_RS29925 0.47 +1.3 58,636 + AZOBR_RS29930 0.13 +1.0 58,637 - AZOBR_RS29930 0.13 +0.4 59,277 + AZOBR_RS29935 0.66 -1.8 59,277 + AZOBR_RS29935 0.66 -3.0 59,765 - -0.1 59,929 - -2.5
Or see this region's nucleotide sequence