Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25785 and AZOBR_RS25790 are separated by 349 nucleotides
AZOBR_RS25785: AZOBR_RS25785 - hypothetical protein, at 833,134 to 835,047
_RS25785
AZOBR_RS25790: AZOBR_RS25790 - hypothetical protein, at 835,397 to 836,572
_RS25790
Position (kb) 835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.585 kb on - strand, within AZOBR_RS25785 at 834.596 kb on + strand, within AZOBR_RS25785 at 834.596 kb on + strand, within AZOBR_RS25785 at 834.596 kb on + strand, within AZOBR_RS25785 at 834.596 kb on + strand, within AZOBR_RS25785 at 834.596 kb on + strand, within AZOBR_RS25785 at 834.596 kb on + strand, within AZOBR_RS25785 at 834.596 kb on + strand, within AZOBR_RS25785 at 834.597 kb on - strand, within AZOBR_RS25785 at 834.660 kb on - strand, within AZOBR_RS25785 at 834.827 kb on + strand, within AZOBR_RS25785 at 834.828 kb on - strand, within AZOBR_RS25785 at 834.891 kb on + strand at 834.959 kb on + strand at 834.959 kb on + strand at 834.959 kb on + strand at 834.960 kb on - strand at 834.960 kb on - strand at 834.960 kb on - strand at 834.960 kb on - strand at 835.113 kb on - strand at 835.329 kb on - strand at 835.439 kb on + strand at 835.529 kb on + strand, within AZOBR_RS25790 at 835.655 kb on + strand, within AZOBR_RS25790 at 835.655 kb on + strand, within AZOBR_RS25790 at 835.656 kb on - strand, within AZOBR_RS25790 at 835.718 kb on + strand, within AZOBR_RS25790 at 835.718 kb on + strand, within AZOBR_RS25790 at 835.718 kb on + strand, within AZOBR_RS25790 at 835.718 kb on + strand, within AZOBR_RS25790 at 835.718 kb on + strand, within AZOBR_RS25790 at 835.718 kb on + strand, within AZOBR_RS25790 at 835.719 kb on - strand, within AZOBR_RS25790 at 835.880 kb on + strand, within AZOBR_RS25790 at 835.881 kb on - strand, within AZOBR_RS25790 at 835.881 kb on - strand, within AZOBR_RS25790 at 835.980 kb on - strand, within AZOBR_RS25790 at 835.980 kb on - strand, within AZOBR_RS25790 at 835.980 kb on - strand, within AZOBR_RS25790 at 836.658 kb on - strand at 836.658 kb on - strand at 836.846 kb on + strand at 836.847 kb on - strand at 837.156 kb on - strand at 837.197 kb on + strand at 837.197 kb on + strand at 837.197 kb on + strand at 837.197 kb on + strand at 837.198 kb on - strand at 837.198 kb on - strand at 837.198 kb on - strand at 837.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 834,585 - AZOBR_RS25785 0.76 +0.2 834,596 + AZOBR_RS25785 0.76 -1.3 834,596 + AZOBR_RS25785 0.76 +0.1 834,596 + AZOBR_RS25785 0.76 +1.2 834,596 + AZOBR_RS25785 0.76 -0.2 834,596 + AZOBR_RS25785 0.76 -1.1 834,596 + AZOBR_RS25785 0.76 +0.1 834,596 + AZOBR_RS25785 0.76 +0.4 834,597 - AZOBR_RS25785 0.76 -0.1 834,660 - AZOBR_RS25785 0.80 +0.7 834,827 + AZOBR_RS25785 0.88 -0.3 834,828 - AZOBR_RS25785 0.89 -0.5 834,891 + -0.2 834,959 + -0.4 834,959 + -0.2 834,959 + +0.2 834,960 - -0.1 834,960 - -0.1 834,960 - -1.0 834,960 - -0.2 835,113 - +0.2 835,329 - -1.4 835,439 + -0.3 835,529 + AZOBR_RS25790 0.11 -0.1 835,655 + AZOBR_RS25790 0.22 -0.4 835,655 + AZOBR_RS25790 0.22 -1.8 835,656 - AZOBR_RS25790 0.22 -1.3 835,718 + AZOBR_RS25790 0.27 +0.9 835,718 + AZOBR_RS25790 0.27 -0.1 835,718 + AZOBR_RS25790 0.27 -0.1 835,718 + AZOBR_RS25790 0.27 +1.1 835,718 + AZOBR_RS25790 0.27 -0.2 835,718 + AZOBR_RS25790 0.27 -0.0 835,719 - AZOBR_RS25790 0.27 -1.2 835,880 + AZOBR_RS25790 0.41 -0.2 835,881 - AZOBR_RS25790 0.41 -0.9 835,881 - AZOBR_RS25790 0.41 -2.1 835,980 - AZOBR_RS25790 0.50 +0.5 835,980 - AZOBR_RS25790 0.50 -2.8 835,980 - AZOBR_RS25790 0.50 -0.9 836,658 - +0.6 836,658 - -1.1 836,846 + -1.6 836,847 - -1.6 837,156 - -0.7 837,197 + -0.1 837,197 + -1.3 837,197 + +0.1 837,197 + -0.2 837,198 - +0.9 837,198 - -1.4 837,198 - -0.3 837,198 - -0.3
Or see this region's nucleotide sequence