Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23805

Experiment: casaminos (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS23800 and AZOBR_RS23805 are separated by 10 nucleotidesAZOBR_RS23805 and AZOBR_RS23810 are separated by 111 nucleotides AZOBR_RS23800: AZOBR_RS23800 - 2-keto-4-methylthiobutyrate aminotransferase, at 370,928 to 371,740 _RS23800 AZOBR_RS23805: AZOBR_RS23805 - hypothetical protein, at 371,751 to 372,212 _RS23805 AZOBR_RS23810: AZOBR_RS23810 - protease, at 372,324 to 373,409 _RS23810 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1at 371.372 kb on + strand, within AZOBR_RS23800at 371.372 kb on + strand, within AZOBR_RS23800at 371.373 kb on - strand, within AZOBR_RS23800at 371.764 kb on + strandat 371.765 kb on - strandat 371.765 kb on - strandat 371.896 kb on + strand, within AZOBR_RS23805at 371.897 kb on - strand, within AZOBR_RS23805at 371.897 kb on - strand, within AZOBR_RS23805at 372.256 kb on + strandat 372.257 kb on - strandat 372.729 kb on - strand, within AZOBR_RS23810at 372.775 kb on + strand, within AZOBR_RS23810at 372.775 kb on + strand, within AZOBR_RS23810at 372.886 kb on + strand, within AZOBR_RS23810at 372.886 kb on + strand, within AZOBR_RS23810at 372.886 kb on + strand, within AZOBR_RS23810at 372.887 kb on - strand, within AZOBR_RS23810at 372.887 kb on - strand, within AZOBR_RS23810at 372.887 kb on - strand, within AZOBR_RS23810at 372.887 kb on - strand, within AZOBR_RS23810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
remove
371,372 + AZOBR_RS23800 0.55 +1.1
371,372 + AZOBR_RS23800 0.55 -1.5
371,373 - AZOBR_RS23800 0.55 +0.3
371,764 + +0.8
371,765 - -2.4
371,765 - +0.1
371,896 + AZOBR_RS23805 0.31 -2.6
371,897 - AZOBR_RS23805 0.32 -2.3
371,897 - AZOBR_RS23805 0.32 +1.1
372,256 + -0.8
372,257 - +0.3
372,729 - AZOBR_RS23810 0.37 -0.0
372,775 + AZOBR_RS23810 0.42 +0.5
372,775 + AZOBR_RS23810 0.42 +1.4
372,886 + AZOBR_RS23810 0.52 -0.0
372,886 + AZOBR_RS23810 0.52 -0.4
372,886 + AZOBR_RS23810 0.52 +1.6
372,887 - AZOBR_RS23810 0.52 +0.0
372,887 - AZOBR_RS23810 0.52 +0.7
372,887 - AZOBR_RS23810 0.52 +0.4
372,887 - AZOBR_RS23810 0.52 -2.7

Or see this region's nucleotide sequence