Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21580

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21570 and AZOBR_RS21575 overlap by 4 nucleotidesAZOBR_RS21575 and AZOBR_RS21580 are separated by 15 nucleotidesAZOBR_RS21580 and AZOBR_RS21585 are separated by 7 nucleotidesAZOBR_RS21585 and AZOBR_RS21590 are separated by 13 nucleotides AZOBR_RS21570: AZOBR_RS21570 - N-acetylneuraminate synthase, at 1,616,129 to 1,617,181 _RS21570 AZOBR_RS21575: AZOBR_RS21575 - spore coat protein, at 1,617,178 to 1,617,936 _RS21575 AZOBR_RS21580: AZOBR_RS21580 - hypothetical protein, at 1,617,952 to 1,618,185 _RS21580 AZOBR_RS21585: AZOBR_RS21585 - alpha/beta hydrolase, at 1,618,193 to 1,619,011 _RS21585 AZOBR_RS21590: AZOBR_RS21590 - hypothetical protein, at 1,619,025 to 1,619,303 _RS21590 Position (kb) 1617 1618 1619Strain fitness (log2 ratio) -3 -2 -1 0 1at 1617.002 kb on + strand, within AZOBR_RS21570at 1617.003 kb on - strand, within AZOBR_RS21570at 1617.696 kb on + strand, within AZOBR_RS21575at 1617.697 kb on - strand, within AZOBR_RS21575at 1617.700 kb on + strand, within AZOBR_RS21575at 1618.260 kb on - strandat 1618.260 kb on - strandat 1618.514 kb on + strand, within AZOBR_RS21585at 1618.514 kb on + strand, within AZOBR_RS21585at 1618.514 kb on + strand, within AZOBR_RS21585at 1618.515 kb on - strandat 1618.945 kb on + strandat 1618.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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1,617,002 + AZOBR_RS21570 0.83 -0.9
1,617,003 - AZOBR_RS21570 0.83 -2.2
1,617,696 + AZOBR_RS21575 0.68 -3.2
1,617,697 - AZOBR_RS21575 0.68 -2.4
1,617,700 + AZOBR_RS21575 0.69 -1.6
1,618,260 - -0.8
1,618,260 - -1.0
1,618,514 + AZOBR_RS21585 0.39 -0.3
1,618,514 + AZOBR_RS21585 0.39 +0.1
1,618,514 + AZOBR_RS21585 0.39 +0.3
1,618,515 - -0.7
1,618,945 + +0.3
1,618,946 - -1.7

Or see this region's nucleotide sequence