Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17785 and AZOBR_RS17790 are separated by 267 nucleotides AZOBR_RS17790 and AZOBR_RS17795 are separated by 66 nucleotides AZOBR_RS17795 and AZOBR_RS17805 are separated by 849 nucleotides
AZOBR_RS17785: AZOBR_RS17785 - hypothetical protein, at 751,745 to 752,050
_RS17785
AZOBR_RS17790: AZOBR_RS17790 - thioredoxin peroxidase, at 752,318 to 752,785
_RS17790
AZOBR_RS17795: AZOBR_RS17795 - hypothetical protein, at 752,852 to 753,373
_RS17795
AZOBR_RS17805: AZOBR_RS17805 - serine protease, at 754,223 to 755,710
_RS17805
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 752.159 kb on + strand at 752.159 kb on + strand at 752.256 kb on + strand at 752.432 kb on + strand, within AZOBR_RS17790 at 752.432 kb on + strand, within AZOBR_RS17790 at 752.433 kb on - strand, within AZOBR_RS17790 at 752.477 kb on + strand, within AZOBR_RS17790 at 752.477 kb on + strand, within AZOBR_RS17790 at 752.478 kb on - strand, within AZOBR_RS17790 at 752.634 kb on - strand, within AZOBR_RS17790 at 752.784 kb on - strand at 752.784 kb on - strand at 752.809 kb on - strand at 752.939 kb on + strand, within AZOBR_RS17795 at 752.940 kb on - strand, within AZOBR_RS17795 at 752.940 kb on - strand, within AZOBR_RS17795 at 752.952 kb on - strand, within AZOBR_RS17795 at 752.952 kb on - strand, within AZOBR_RS17795 at 752.996 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.230 kb on + strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.231 kb on - strand, within AZOBR_RS17795 at 753.303 kb on + strand, within AZOBR_RS17795 at 753.304 kb on - strand, within AZOBR_RS17795 at 753.371 kb on + strand at 753.372 kb on - strand at 753.495 kb on - strand at 754.041 kb on - strand at 754.138 kb on - strand at 754.184 kb on + strand at 754.184 kb on + strand at 754.184 kb on + strand at 754.184 kb on + strand at 754.184 kb on + strand at 754.184 kb on + strand at 754.184 kb on + strand at 754.184 kb on + strand at 754.185 kb on - strand at 754.185 kb on - strand at 754.185 kb on - strand at 754.185 kb on - strand at 754.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 752,159 + +1.1 752,159 + -2.7 752,256 + +0.7 752,432 + AZOBR_RS17790 0.24 +0.2 752,432 + AZOBR_RS17790 0.24 -1.3 752,433 - AZOBR_RS17790 0.25 -2.8 752,477 + AZOBR_RS17790 0.34 -2.8 752,477 + AZOBR_RS17790 0.34 +0.1 752,478 - AZOBR_RS17790 0.34 -0.5 752,634 - AZOBR_RS17790 0.68 +2.1 752,784 - +0.8 752,784 - +0.3 752,809 - -0.2 752,939 + AZOBR_RS17795 0.17 +0.1 752,940 - AZOBR_RS17795 0.17 -0.7 752,940 - AZOBR_RS17795 0.17 -2.3 752,952 - AZOBR_RS17795 0.19 -0.4 752,952 - AZOBR_RS17795 0.19 -1.4 752,996 + AZOBR_RS17795 0.28 +0.4 753,230 + AZOBR_RS17795 0.72 -2.4 753,230 + AZOBR_RS17795 0.72 -0.3 753,230 + AZOBR_RS17795 0.72 +0.7 753,230 + AZOBR_RS17795 0.72 -1.2 753,230 + AZOBR_RS17795 0.72 -1.8 753,230 + AZOBR_RS17795 0.72 -0.8 753,230 + AZOBR_RS17795 0.72 -0.0 753,230 + AZOBR_RS17795 0.72 +0.4 753,230 + AZOBR_RS17795 0.72 -0.2 753,230 + AZOBR_RS17795 0.72 -1.5 753,230 + AZOBR_RS17795 0.72 -0.7 753,230 + AZOBR_RS17795 0.72 +1.1 753,230 + AZOBR_RS17795 0.72 -0.7 753,230 + AZOBR_RS17795 0.72 -0.6 753,230 + AZOBR_RS17795 0.72 +0.4 753,230 + AZOBR_RS17795 0.72 +0.2 753,230 + AZOBR_RS17795 0.72 -0.7 753,230 + AZOBR_RS17795 0.72 -0.7 753,230 + AZOBR_RS17795 0.72 +0.5 753,230 + AZOBR_RS17795 0.72 -0.4 753,230 + AZOBR_RS17795 0.72 +1.4 753,231 - AZOBR_RS17795 0.73 -1.0 753,231 - AZOBR_RS17795 0.73 -0.2 753,231 - AZOBR_RS17795 0.73 +0.4 753,231 - AZOBR_RS17795 0.73 -0.9 753,231 - AZOBR_RS17795 0.73 +0.3 753,231 - AZOBR_RS17795 0.73 +1.4 753,231 - AZOBR_RS17795 0.73 -1.0 753,231 - AZOBR_RS17795 0.73 -2.0 753,231 - AZOBR_RS17795 0.73 -0.9 753,231 - AZOBR_RS17795 0.73 -0.8 753,231 - AZOBR_RS17795 0.73 -1.6 753,231 - AZOBR_RS17795 0.73 -2.2 753,231 - AZOBR_RS17795 0.73 -1.6 753,231 - AZOBR_RS17795 0.73 -1.9 753,231 - AZOBR_RS17795 0.73 +0.2 753,231 - AZOBR_RS17795 0.73 +0.2 753,303 + AZOBR_RS17795 0.86 +0.1 753,304 - AZOBR_RS17795 0.87 +0.3 753,371 + -0.1 753,372 - +0.0 753,495 - +1.1 754,041 - -0.3 754,138 - +0.3 754,184 + +0.7 754,184 + -3.6 754,184 + -1.8 754,184 + +1.3 754,184 + -1.8 754,184 + -0.4 754,184 + -1.1 754,184 + -0.4 754,185 - +0.5 754,185 - +0.2 754,185 - -0.2 754,185 - -2.0 754,185 - -0.4
Or see this region's nucleotide sequence