Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17575 and AZOBR_RS17580 are separated by 4 nucleotides AZOBR_RS17580 and AZOBR_RS17585 are separated by 32 nucleotides AZOBR_RS17585 and AZOBR_RS17590 are separated by 356 nucleotides AZOBR_RS17590 and AZOBR_RS17595 overlap by 4 nucleotides
AZOBR_RS17575: AZOBR_RS17575 - tRNA-Asn, at 700,057 to 700,132
_RS17575
AZOBR_RS17580: AZOBR_RS17580 - tRNA-Asp, at 700,137 to 700,213
_RS17580
AZOBR_RS17585: AZOBR_RS17585 - hypothetical protein, at 700,246 to 700,692
_RS17585
AZOBR_RS17590: AZOBR_RS17590 - hypothetical protein, at 701,049 to 702,452
_RS17590
AZOBR_RS17595: AZOBR_RS17595 - MFS transporter, at 702,449 to 704,101
_RS17595
Position (kb) 701
702
703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 700.065 kb on - strand, within AZOBR_RS17575 at 700.357 kb on - strand, within AZOBR_RS17585 at 700.891 kb on + strand at 700.891 kb on + strand at 700.891 kb on + strand at 700.892 kb on - strand at 700.954 kb on - strand at 700.954 kb on - strand at 700.997 kb on - strand at 701.140 kb on + strand at 701.209 kb on + strand, within AZOBR_RS17590 at 701.259 kb on + strand, within AZOBR_RS17590 at 701.260 kb on + strand, within AZOBR_RS17590 at 701.260 kb on + strand, within AZOBR_RS17590 at 701.260 kb on + strand, within AZOBR_RS17590 at 701.261 kb on - strand, within AZOBR_RS17590 at 701.398 kb on + strand, within AZOBR_RS17590 at 701.694 kb on - strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.708 kb on - strand, within AZOBR_RS17590 at 701.708 kb on - strand, within AZOBR_RS17590 at 701.711 kb on - strand, within AZOBR_RS17590 at 701.711 kb on - strand, within AZOBR_RS17590 at 701.711 kb on - strand, within AZOBR_RS17590 at 701.758 kb on + strand, within AZOBR_RS17590 at 701.759 kb on - strand, within AZOBR_RS17590 at 701.912 kb on - strand, within AZOBR_RS17590 at 701.921 kb on + strand, within AZOBR_RS17590 at 701.921 kb on + strand, within AZOBR_RS17590 at 701.922 kb on - strand, within AZOBR_RS17590 at 701.922 kb on - strand, within AZOBR_RS17590 at 701.941 kb on + strand, within AZOBR_RS17590 at 701.942 kb on - strand, within AZOBR_RS17590 at 702.157 kb on + strand, within AZOBR_RS17590 at 702.332 kb on - strand at 702.332 kb on - strand at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 700,065 - AZOBR_RS17575 0.11 -0.6 700,357 - AZOBR_RS17585 0.25 -1.9 700,891 + +0.9 700,891 + -0.3 700,891 + +0.8 700,892 - -0.3 700,954 - -0.1 700,954 - -1.1 700,997 - +0.2 701,140 + -3.1 701,209 + AZOBR_RS17590 0.11 -1.6 701,259 + AZOBR_RS17590 0.15 -0.2 701,260 + AZOBR_RS17590 0.15 -3.5 701,260 + AZOBR_RS17590 0.15 -0.1 701,260 + AZOBR_RS17590 0.15 -2.9 701,261 - AZOBR_RS17590 0.15 -0.4 701,398 + AZOBR_RS17590 0.25 +0.0 701,694 - AZOBR_RS17590 0.46 -0.9 701,707 + AZOBR_RS17590 0.47 -0.0 701,707 + AZOBR_RS17590 0.47 -1.5 701,707 + AZOBR_RS17590 0.47 +0.2 701,707 + AZOBR_RS17590 0.47 +0.1 701,708 - AZOBR_RS17590 0.47 -0.1 701,708 - AZOBR_RS17590 0.47 +0.0 701,711 - AZOBR_RS17590 0.47 -0.3 701,711 - AZOBR_RS17590 0.47 -0.3 701,711 - AZOBR_RS17590 0.47 -0.8 701,758 + AZOBR_RS17590 0.50 -1.0 701,759 - AZOBR_RS17590 0.51 -0.6 701,912 - AZOBR_RS17590 0.61 +2.0 701,921 + AZOBR_RS17590 0.62 +0.0 701,921 + AZOBR_RS17590 0.62 +0.5 701,922 - AZOBR_RS17590 0.62 -0.2 701,922 - AZOBR_RS17590 0.62 -1.1 701,941 + AZOBR_RS17590 0.64 +1.1 701,942 - AZOBR_RS17590 0.64 -3.1 702,157 + AZOBR_RS17590 0.79 -0.6 702,332 - -0.9 702,332 - -0.3 703,266 + AZOBR_RS17595 0.49 -2.7 703,266 + AZOBR_RS17595 0.49 +0.0 703,266 + AZOBR_RS17595 0.49 -0.5 703,266 + AZOBR_RS17595 0.49 -2.0 703,266 + AZOBR_RS17595 0.49 +1.1 703,266 + AZOBR_RS17595 0.49 +0.3 703,266 + AZOBR_RS17595 0.49 -0.7
Or see this region's nucleotide sequence