Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15915 and AZOBR_RS15920 are separated by 30 nucleotides AZOBR_RS15920 and AZOBR_RS15925 are separated by 82 nucleotides
AZOBR_RS15915: AZOBR_RS15915 - gluconate TRAP transporter, periplasmic solute-binding component <small>(from data)</small>, at 324,195 to 325,208
_RS15915
AZOBR_RS15920: AZOBR_RS15920 - Large component of TRAP-type D-gluconate transporter <small>(from data)</small>, at 325,239 to 326,519
_RS15920
AZOBR_RS15925: AZOBR_RS15925 - gluconate TRAP transporter, small permease component <small>(from data)</small>, at 326,602 to 327,093
_RS15925
Position (kb) 325
326
327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 324.497 kb on - strand, within AZOBR_RS15915 at 324.520 kb on + strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.535 kb on + strand, within AZOBR_RS15915 at 324.536 kb on - strand, within AZOBR_RS15915 at 324.667 kb on + strand, within AZOBR_RS15915 at 324.668 kb on - strand, within AZOBR_RS15915 at 325.312 kb on + strand at 325.313 kb on - strand at 325.454 kb on - strand, within AZOBR_RS15920 at 325.651 kb on + strand, within AZOBR_RS15920 at 325.652 kb on - strand, within AZOBR_RS15920 at 325.652 kb on - strand, within AZOBR_RS15920 at 325.780 kb on + strand, within AZOBR_RS15920 at 325.781 kb on - strand, within AZOBR_RS15920 at 326.236 kb on + strand, within AZOBR_RS15920 at 326.236 kb on + strand, within AZOBR_RS15920 at 326.236 kb on + strand, within AZOBR_RS15920 at 326.237 kb on - strand, within AZOBR_RS15920 at 326.237 kb on - strand, within AZOBR_RS15920 at 326.237 kb on - strand, within AZOBR_RS15920 at 326.237 kb on - strand, within AZOBR_RS15920 at 326.360 kb on - strand, within AZOBR_RS15920 at 326.712 kb on - strand, within AZOBR_RS15925 at 326.804 kb on + strand, within AZOBR_RS15925 at 326.804 kb on + strand, within AZOBR_RS15925 at 326.805 kb on - strand, within AZOBR_RS15925 at 326.805 kb on - strand, within AZOBR_RS15925 at 327.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 324,497 - AZOBR_RS15915 0.30 +0.3 324,520 + AZOBR_RS15915 0.32 -1.7 324,521 - AZOBR_RS15915 0.32 -0.8 324,521 - AZOBR_RS15915 0.32 +0.5 324,535 + AZOBR_RS15915 0.34 +0.1 324,536 - AZOBR_RS15915 0.34 -1.1 324,667 + AZOBR_RS15915 0.47 +0.9 324,668 - AZOBR_RS15915 0.47 -0.3 325,312 + -0.6 325,313 - -3.9 325,454 - AZOBR_RS15920 0.17 +0.4 325,651 + AZOBR_RS15920 0.32 +0.3 325,652 - AZOBR_RS15920 0.32 +0.4 325,652 - AZOBR_RS15920 0.32 +0.6 325,780 + AZOBR_RS15920 0.42 -1.5 325,781 - AZOBR_RS15920 0.42 +0.1 326,236 + AZOBR_RS15920 0.78 -0.5 326,236 + AZOBR_RS15920 0.78 -1.2 326,236 + AZOBR_RS15920 0.78 -1.4 326,237 - AZOBR_RS15920 0.78 +0.2 326,237 - AZOBR_RS15920 0.78 -0.9 326,237 - AZOBR_RS15920 0.78 +0.2 326,237 - AZOBR_RS15920 0.78 +0.3 326,360 - AZOBR_RS15920 0.88 -1.8 326,712 - AZOBR_RS15925 0.22 -0.5 326,804 + AZOBR_RS15925 0.41 -0.2 326,804 + AZOBR_RS15925 0.41 -0.0 326,805 - AZOBR_RS15925 0.41 -0.3 326,805 - AZOBR_RS15925 0.41 -0.1 327,392 - +0.8
Or see this region's nucleotide sequence