Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00580

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00570 and AZOBR_RS00575 are separated by 61 nucleotidesAZOBR_RS00575 and AZOBR_RS00580 overlap by 4 nucleotidesAZOBR_RS00580 and AZOBR_RS00585 are separated by 44 nucleotides AZOBR_RS00570: AZOBR_RS00570 - hypothetical protein, at 114,305 to 114,736 _RS00570 AZOBR_RS00575: AZOBR_RS00575 - ATPase, at 114,798 to 115,256 _RS00575 AZOBR_RS00580: AZOBR_RS00580 - aminoglycoside phosphotransferase, at 115,253 to 116,266 _RS00580 AZOBR_RS00585: AZOBR_RS00585 - mannose-1-phosphate guanylyltransferase, at 116,311 to 117,048 _RS00585 Position (kb) 115 116 117Strain fitness (log2 ratio) -2 -1 0 1at 114.419 kb on + strand, within AZOBR_RS00570at 114.539 kb on + strand, within AZOBR_RS00570at 114.539 kb on + strand, within AZOBR_RS00570at 115.302 kb on + strandat 115.353 kb on - strandat 115.583 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strandat 115.832 kb on + strand, within AZOBR_RS00580at 115.832 kb on + strand, within AZOBR_RS00580at 115.833 kb on - strand, within AZOBR_RS00580at 115.833 kb on - strand, within AZOBR_RS00580at 116.049 kb on - strand, within AZOBR_RS00580at 116.127 kb on - strand, within AZOBR_RS00580at 116.127 kb on - strand, within AZOBR_RS00580at 116.268 kb on + strandat 116.268 kb on + strandat 116.269 kb on - strandat 116.269 kb on - strandat 116.269 kb on - strandat 116.488 kb on + strand, within AZOBR_RS00585at 116.488 kb on + strand, within AZOBR_RS00585at 116.488 kb on + strand, within AZOBR_RS00585at 116.489 kb on - strand, within AZOBR_RS00585at 116.623 kb on + strand, within AZOBR_RS00585at 116.624 kb on - strand, within AZOBR_RS00585at 116.624 kb on - strand, within AZOBR_RS00585at 116.752 kb on + strand, within AZOBR_RS00585at 116.752 kb on + strand, within AZOBR_RS00585at 116.753 kb on - strand, within AZOBR_RS00585at 116.753 kb on - strand, within AZOBR_RS00585at 116.771 kb on - strand, within AZOBR_RS00585at 116.834 kb on - strand, within AZOBR_RS00585at 117.133 kb on + strandat 117.133 kb on + strandat 117.133 kb on + strandat 117.134 kb on - strandat 117.134 kb on - strandat 117.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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114,419 + AZOBR_RS00570 0.26 +0.2
114,539 + AZOBR_RS00570 0.54 +0.7
114,539 + AZOBR_RS00570 0.54 +0.3
115,302 + +0.0
115,353 - +1.0
115,583 + AZOBR_RS00580 0.33 +0.2
115,712 + AZOBR_RS00580 0.45 +0.7
115,712 + AZOBR_RS00580 0.45 +0.7
115,712 + AZOBR_RS00580 0.45 +0.6
115,712 + AZOBR_RS00580 0.45 +0.8
115,712 + AZOBR_RS00580 0.45 -0.4
115,713 - AZOBR_RS00580 0.45 -0.8
115,713 - AZOBR_RS00580 0.45 -2.7
115,713 - AZOBR_RS00580 0.45 -0.5
115,713 - AZOBR_RS00580 0.45 +0.6
115,713 - AZOBR_RS00580 0.45 +1.4
115,713 - AZOBR_RS00580 0.45 +0.6
115,713 - +1.7
115,832 + AZOBR_RS00580 0.57 +0.1
115,832 + AZOBR_RS00580 0.57 -1.1
115,833 - AZOBR_RS00580 0.57 -0.4
115,833 - AZOBR_RS00580 0.57 -1.7
116,049 - AZOBR_RS00580 0.79 +0.7
116,127 - AZOBR_RS00580 0.86 -0.1
116,127 - AZOBR_RS00580 0.86 +0.8
116,268 + +1.1
116,268 + -0.3
116,269 - -1.0
116,269 - -0.0
116,269 - +0.0
116,488 + AZOBR_RS00585 0.24 -2.2
116,488 + AZOBR_RS00585 0.24 -2.7
116,488 + AZOBR_RS00585 0.24 -0.3
116,489 - AZOBR_RS00585 0.24 -2.2
116,623 + AZOBR_RS00585 0.42 -2.2
116,624 - AZOBR_RS00585 0.42 -0.9
116,624 - AZOBR_RS00585 0.42 -2.2
116,752 + AZOBR_RS00585 0.60 -0.2
116,752 + AZOBR_RS00585 0.60 +0.4
116,753 - AZOBR_RS00585 0.60 +0.4
116,753 - AZOBR_RS00585 0.60 +0.1
116,771 - AZOBR_RS00585 0.62 -1.5
116,834 - AZOBR_RS00585 0.71 +0.7
117,133 + +0.5
117,133 + -0.0
117,133 + -0.6
117,134 - -1.7
117,134 - -0.7
117,157 - -1.3

Or see this region's nucleotide sequence