Experiment: MoYLS4 with Lomefloxacin 0.00078 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3052 and DvMF_3053 overlap by 8 nucleotides DvMF_3053 and DvMF_3054 overlap by 4 nucleotides
DvMF_3052: DvMF_3052 - putative molybdenum ABC transporter, solute-binding protein (RefSeq), at 3,853,604 to 3,854,464
_3052
DvMF_3053: DvMF_3053 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 3,854,457 to 3,855,275
_3053
DvMF_3054: DvMF_3054 - Radical SAM domain protein (RefSeq), at 3,855,272 to 3,856,249
_3054
Position (kb)
3854
3855
3856 Strain fitness (log2 ratio)
-1
0
1 at 3853.600 kb on + strand at 3853.733 kb on - strand, within DvMF_3052 at 3853.761 kb on - strand, within DvMF_3052 at 3853.800 kb on - strand, within DvMF_3052 at 3853.811 kb on + strand, within DvMF_3052 at 3853.818 kb on - strand, within DvMF_3052 at 3853.858 kb on - strand, within DvMF_3052 at 3853.866 kb on + strand, within DvMF_3052 at 3853.897 kb on - strand, within DvMF_3052 at 3854.028 kb on + strand, within DvMF_3052 at 3854.505 kb on + strand at 3854.702 kb on + strand, within DvMF_3053 at 3854.702 kb on + strand, within DvMF_3053 at 3854.702 kb on + strand, within DvMF_3053 at 3854.710 kb on - strand, within DvMF_3053 at 3854.809 kb on - strand, within DvMF_3053 at 3855.109 kb on - strand, within DvMF_3053 at 3855.133 kb on - strand, within DvMF_3053 at 3855.231 kb on - strand at 3855.378 kb on + strand, within DvMF_3054 at 3855.532 kb on + strand, within DvMF_3054 at 3855.833 kb on + strand, within DvMF_3054 at 3856.109 kb on - strand, within DvMF_3054 at 3856.109 kb on - strand, within DvMF_3054 at 3856.219 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM remove 3,853,600 + -0.3 3,853,733 - DvMF_3052 0.15 -0.5 3,853,761 - DvMF_3052 0.18 -0.3 3,853,800 - DvMF_3052 0.23 -0.4 3,853,811 + DvMF_3052 0.24 +0.2 3,853,818 - DvMF_3052 0.25 -0.2 3,853,858 - DvMF_3052 0.30 -0.6 3,853,866 + DvMF_3052 0.30 -0.3 3,853,897 - DvMF_3052 0.34 -0.8 3,854,028 + DvMF_3052 0.49 -0.2 3,854,505 + -0.3 3,854,702 + DvMF_3053 0.30 -0.0 3,854,702 + DvMF_3053 0.30 -0.1 3,854,702 + DvMF_3053 0.30 -0.5 3,854,710 - DvMF_3053 0.31 +0.7 3,854,809 - DvMF_3053 0.43 -0.4 3,855,109 - DvMF_3053 0.80 -0.3 3,855,133 - DvMF_3053 0.83 -0.4 3,855,231 - -0.4 3,855,378 + DvMF_3054 0.11 -0.4 3,855,532 + DvMF_3054 0.27 -0.6 3,855,833 + DvMF_3054 0.57 -0.4 3,856,109 - DvMF_3054 0.86 -0.3 3,856,109 - DvMF_3054 0.86 -0.1 3,856,219 + -0.5
Or see this region's nucleotide sequence