Experiment: MoYLS4 with Lomefloxacin 0.00078 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1266 and DvMF_1267 are separated by 2 nucleotides DvMF_1267 and DvMF_1268 overlap by 1 nucleotides DvMF_1268 and DvMF_1269 are separated by 16 nucleotides DvMF_1269 and DvMF_1270 are separated by 91 nucleotides DvMF_1270 and DvMF_1271 overlap by 4 nucleotides
DvMF_1266: DvMF_1266 - hypothetical protein (RefSeq), at 1,563,516 to 1,564,160
_1266
DvMF_1267: DvMF_1267 - hypothetical protein (RefSeq), at 1,564,163 to 1,564,372
_1267
DvMF_1268: DvMF_1268 - Mu Gam family protein (RefSeq), at 1,564,372 to 1,564,881
_1268
DvMF_1269: DvMF_1269 - hypothetical protein (RefSeq), at 1,564,898 to 1,565,188
_1269
DvMF_1270: DvMF_1270 - hypothetical protein (RefSeq), at 1,565,280 to 1,565,729
_1270
DvMF_1271: DvMF_1271 - hypothetical protein (RefSeq), at 1,565,726 to 1,566,229
_1271
Position (kb) 1564
1565
1566 Strain fitness (log2 ratio) -1
0
1 at 1563.907 kb on + strand, within DvMF_1266 at 1563.957 kb on - strand, within DvMF_1266 at 1564.077 kb on - strand, within DvMF_1266 at 1564.128 kb on - strand at 1564.185 kb on - strand, within DvMF_1267 at 1564.380 kb on + strand at 1564.388 kb on - strand at 1564.693 kb on - strand, within DvMF_1268 at 1564.832 kb on - strand at 1564.869 kb on - strand at 1564.901 kb on + strand at 1564.909 kb on - strand at 1564.970 kb on - strand, within DvMF_1269 at 1565.121 kb on - strand, within DvMF_1269 at 1565.393 kb on - strand, within DvMF_1270 at 1565.503 kb on + strand, within DvMF_1270 at 1565.516 kb on - strand, within DvMF_1270 at 1565.526 kb on - strand, within DvMF_1270 at 1565.755 kb on + strand at 1565.842 kb on + strand, within DvMF_1271 at 1566.077 kb on + strand, within DvMF_1271
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM remove 1,563,907 + DvMF_1266 0.61 -0.2 1,563,957 - DvMF_1266 0.68 -0.1 1,564,077 - DvMF_1266 0.87 -0.1 1,564,128 - -1.1 1,564,185 - DvMF_1267 0.10 +0.5 1,564,380 + +0.2 1,564,388 - -0.1 1,564,693 - DvMF_1268 0.63 +0.1 1,564,832 - -0.4 1,564,869 - +0.0 1,564,901 + +1.4 1,564,909 - +0.5 1,564,970 - DvMF_1269 0.25 +0.2 1,565,121 - DvMF_1269 0.77 +0.3 1,565,393 - DvMF_1270 0.25 +0.9 1,565,503 + DvMF_1270 0.50 -0.2 1,565,516 - DvMF_1270 0.52 +0.0 1,565,526 - DvMF_1270 0.55 +0.5 1,565,755 + +0.3 1,565,842 + DvMF_1271 0.23 -0.0 1,566,077 + DvMF_1271 0.70 -0.4
Or see this region's nucleotide sequence