Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1212

Experiment: MoYLS4 with Lomefloxacin 0.00078 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1211 and DvMF_1212 are separated by 623 nucleotidesDvMF_1212 and DvMF_1213 overlap by 4 nucleotides DvMF_1211: DvMF_1211 - response regulator receiver protein (RefSeq), at 1,490,370 to 1,490,801 _1211 DvMF_1212: DvMF_1212 - hypothetical protein (RefSeq), at 1,491,425 to 1,491,820 _1212 DvMF_1213: DvMF_1213 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 1,491,817 to 1,493,421 _1213 Position (kb) 1491 1492Strain fitness (log2 ratio) -1 0 1at 1490.791 kb on - strandat 1490.937 kb on + strandat 1491.182 kb on + strandat 1491.389 kb on - strandat 1491.902 kb on + strandat 1491.923 kb on + strandat 1492.001 kb on + strand, within DvMF_1213at 1492.067 kb on - strand, within DvMF_1213at 1492.155 kb on + strand, within DvMF_1213at 1492.354 kb on + strand, within DvMF_1213at 1492.479 kb on - strand, within DvMF_1213at 1492.479 kb on - strand, within DvMF_1213at 1492.482 kb on - strand, within DvMF_1213at 1492.655 kb on - strand, within DvMF_1213

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM
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1,490,791 - -0.2
1,490,937 + -1.1
1,491,182 + -0.8
1,491,389 - -0.3
1,491,902 + -0.2
1,491,923 + -0.2
1,492,001 + DvMF_1213 0.11 +1.0
1,492,067 - DvMF_1213 0.16 -0.4
1,492,155 + DvMF_1213 0.21 +0.5
1,492,354 + DvMF_1213 0.33 -0.2
1,492,479 - DvMF_1213 0.41 -0.3
1,492,479 - DvMF_1213 0.41 -0.4
1,492,482 - DvMF_1213 0.41 -0.3
1,492,655 - DvMF_1213 0.52 -0.6

Or see this region's nucleotide sequence