Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0926

Experiment: MoYLS4 with Lomefloxacin 0.00078 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0925 and DvMF_0926 are separated by 246 nucleotidesDvMF_0926 and DvMF_0927 are separated by 326 nucleotides DvMF_0925: DvMF_0925 - ribonuclease R (RefSeq), at 1,119,239 to 1,122,352 _0925 DvMF_0926: DvMF_0926 - tetraacyldisaccharide 4'-kinase (RefSeq), at 1,122,599 to 1,123,717 _0926 DvMF_0927: DvMF_0927 - protein of unknown function UPF0005 (RefSeq), at 1,124,044 to 1,124,751 _0927 Position (kb) 1122 1123 1124Strain fitness (log2 ratio) -1 0 1at 1122.085 kb on - strandat 1122.123 kb on + strandat 1122.243 kb on - strandat 1122.464 kb on + strandat 1122.468 kb on + strandat 1122.495 kb on + strandat 1122.576 kb on - strandat 1123.842 kb on + strandat 1123.847 kb on + strandat 1123.855 kb on - strandat 1123.889 kb on + strandat 1123.911 kb on - strandat 1124.097 kb on + strandat 1124.214 kb on - strand, within DvMF_0927at 1124.347 kb on - strand, within DvMF_0927at 1124.429 kb on + strand, within DvMF_0927at 1124.462 kb on - strand, within DvMF_0927at 1124.514 kb on + strand, within DvMF_0927at 1124.571 kb on - strand, within DvMF_0927at 1124.572 kb on + strand, within DvMF_0927at 1124.577 kb on + strand, within DvMF_0927at 1124.674 kb on + strand, within DvMF_0927at 1124.682 kb on - strandat 1124.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM
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1,122,085 - -0.3
1,122,123 + -0.4
1,122,243 - -0.3
1,122,464 + -1.2
1,122,468 + -0.1
1,122,495 + -0.4
1,122,576 - -0.8
1,123,842 + -0.2
1,123,847 + -0.0
1,123,855 - -0.4
1,123,889 + -0.9
1,123,911 - -0.9
1,124,097 + -0.2
1,124,214 - DvMF_0927 0.24 -0.3
1,124,347 - DvMF_0927 0.43 -0.2
1,124,429 + DvMF_0927 0.54 -0.4
1,124,462 - DvMF_0927 0.59 +0.1
1,124,514 + DvMF_0927 0.66 +0.5
1,124,571 - DvMF_0927 0.74 -0.2
1,124,572 + DvMF_0927 0.75 +0.1
1,124,577 + DvMF_0927 0.75 -0.2
1,124,674 + DvMF_0927 0.89 -0.5
1,124,682 - +0.2
1,124,682 - +0.0

Or see this region's nucleotide sequence