Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0924

Experiment: MoYLS4 with Lomefloxacin 0.00078 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0923 and DvMF_0924 are separated by 142 nucleotidesDvMF_0924 and DvMF_0925 are separated by 205 nucleotides DvMF_0923: DvMF_0923 - SMC domain protein (RefSeq), at 1,115,673 to 1,117,325 _0923 DvMF_0924: DvMF_0924 - hypothetical protein (RefSeq), at 1,117,468 to 1,119,033 _0924 DvMF_0925: DvMF_0925 - ribonuclease R (RefSeq), at 1,119,239 to 1,122,352 _0925 Position (kb) 1117 1118 1119 1120Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1116.908 kb on - strand, within DvMF_0923at 1116.934 kb on + strand, within DvMF_0923at 1117.138 kb on + strand, within DvMF_0923at 1117.216 kb on + strandat 1117.441 kb on + strandat 1117.560 kb on + strandat 1117.594 kb on + strandat 1117.602 kb on - strandat 1117.759 kb on - strand, within DvMF_0924at 1117.860 kb on - strand, within DvMF_0924at 1117.968 kb on + strand, within DvMF_0924at 1118.131 kb on - strand, within DvMF_0924at 1118.433 kb on + strand, within DvMF_0924at 1118.433 kb on + strand, within DvMF_0924at 1118.501 kb on + strand, within DvMF_0924at 1118.668 kb on + strand, within DvMF_0924at 1119.068 kb on + strandat 1119.076 kb on - strandat 1119.215 kb on - strandat 1119.301 kb on + strandat 1119.566 kb on + strand, within DvMF_0925at 1119.603 kb on + strand, within DvMF_0925at 1119.611 kb on - strand, within DvMF_0925

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM
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1,116,908 - DvMF_0923 0.75 -4.1
1,116,934 + DvMF_0923 0.76 -4.6
1,117,138 + DvMF_0923 0.89 -5.3
1,117,216 + -3.4
1,117,441 + -0.2
1,117,560 + -0.4
1,117,594 + -0.5
1,117,602 - -0.9
1,117,759 - DvMF_0924 0.19 +0.1
1,117,860 - DvMF_0924 0.25 -1.4
1,117,968 + DvMF_0924 0.32 +0.3
1,118,131 - DvMF_0924 0.42 +0.8
1,118,433 + DvMF_0924 0.62 -0.1
1,118,433 + DvMF_0924 0.62 -0.2
1,118,501 + DvMF_0924 0.66 -0.6
1,118,668 + DvMF_0924 0.77 -0.0
1,119,068 + -0.8
1,119,076 - -0.3
1,119,215 - -0.2
1,119,301 + -0.1
1,119,566 + DvMF_0925 0.11 -0.4
1,119,603 + DvMF_0925 0.12 -0.7
1,119,611 - DvMF_0925 0.12 +0.0

Or see this region's nucleotide sequence