Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0806

Experiment: MoYLS4 with Lomefloxacin 0.00078 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0805 and DvMF_0806 are separated by 262 nucleotidesDvMF_0806 and DvMF_0807 are separated by 267 nucleotides DvMF_0805: DvMF_0805 - protein of unknown function DUF6 transmembrane (RefSeq), at 970,420 to 971,280 _0805 DvMF_0806: DvMF_0806 - transcriptional regulator, AraC family (RefSeq), at 971,543 to 972,610 _0806 DvMF_0807: DvMF_0807 - Bile acid:sodium symporter (RefSeq), at 972,878 to 973,951 _0807 Position (kb) 971 972 973Strain fitness (log2 ratio) -1 0 1at 970.551 kb on - strand, within DvMF_0805at 970.765 kb on - strand, within DvMF_0805at 970.987 kb on + strand, within DvMF_0805at 971.012 kb on + strand, within DvMF_0805at 971.365 kb on + strandat 971.943 kb on - strand, within DvMF_0806at 972.027 kb on + strand, within DvMF_0806at 972.153 kb on - strand, within DvMF_0806at 972.346 kb on + strand, within DvMF_0806at 972.507 kb on - strandat 972.825 kb on - strandat 973.539 kb on - strand, within DvMF_0807at 973.602 kb on + strand, within DvMF_0807

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM
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970,551 - DvMF_0805 0.15 -0.5
970,765 - DvMF_0805 0.40 -0.4
970,987 + DvMF_0805 0.66 -0.2
971,012 + DvMF_0805 0.69 -0.2
971,365 + -0.4
971,943 - DvMF_0806 0.37 -0.4
972,027 + DvMF_0806 0.45 -0.9
972,153 - DvMF_0806 0.57 -1.2
972,346 + DvMF_0806 0.75 -1.0
972,507 - -0.3
972,825 - -0.2
973,539 - DvMF_0807 0.62 -0.9
973,602 + DvMF_0807 0.67 -0.3

Or see this region's nucleotide sequence